View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_4 (Length: 602)
Name: NF20116_low_4
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 42400255 - 42399673
Alignment:
| Q |
1 |
gataacaattaattcagtcaaaaacacataataatatggaaataccaacctatcctgatatatgccaaatacaccagctgcatgtatgagatcataagtt |
100 |
Q |
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| T |
42400255 |
gataacaattaattcagtcaaaaacacataataatatggaaataccaacctatcctgatatatgccaaatacaccagctgcatgtatgagatcataagtt |
42400156 |
T |
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| Q |
101 |
ctagggtaagttgagaaagcttcacaccaatcatggtaagtcccaatgaaacctctttcaaagattgcaccaagagtatcatgagctgaatttgaaggaa |
200 |
Q |
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| T |
42400155 |
ctagggtaagttgagaaagcttcacaccaatcatggtaagtcccaatgaaacctctttcaaagattgcaccaagagtatcatgagctgaatttgaaggaa |
42400056 |
T |
|
| Q |
201 |
caacattcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatatcttccttgagcaat |
300 |
Q |
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| T |
42400055 |
caacattcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatatcttccttgagcaat |
42399956 |
T |
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| Q |
301 |
aggagtgatatgcttgtaatgtgacattctgtccttccataattcattgtccttttgaaatttctctgcagtgatgcttggtattaaaccactactaatt |
400 |
Q |
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| T |
42399955 |
aggagtgatatgcttgtaatgtgacattctgtccttccataattcattgtccttttgaaatttctctgcagtgatgcttggtattaaaccactactaatt |
42399856 |
T |
|
| Q |
401 |
ctaggaggtactgcaaaggcacgtcttggccatttttctagttcccctccagctactttgcttgggctggtaacttctggtaatggagttatgcactttt |
500 |
Q |
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| T |
42399855 |
ctaggaggtactgcaaaggcacgtcttggccatttttctagttcccctccagctactttgcttgggctggtaacttctggtaatggagttatgcactttt |
42399756 |
T |
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| Q |
501 |
ccatattttggtacctttttaaatgtaaatcaaacagagaaaaatggtaaacaaaatatatcaaattttaaacatgcaaaggg |
583 |
Q |
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| T |
42399755 |
ccatattttggtacctttttaaatgtaaatcaaacagagaaaaatggtaaacaaaatatatcaaattttaaacatgcaaaggg |
42399673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 42400283 - 42400251
Alignment:
| Q |
2 |
ataacaattaattcagtcaaaaacacataataa |
34 |
Q |
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| T |
42400283 |
ataacaattaattcagtcaaaaacacatgataa |
42400251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 503625 - 503714
Alignment:
| Q |
197 |
ggaacaacattcataacccaaactggaaattttaataatgctgctgcaaatccaccaaggtaagcattcatatcaataatgtttctatat |
286 |
Q |
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||||||||||||||||||||||||||| |||| | ||||| |||||||||||||||| | |||||||||||| |||| ||||||||| |
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| T |
503625 |
ggaacaacattcataacccaaactggatatttcaccaatgcagctgcaaatccaccaaagccagcattcatatccataacatttctatat |
503714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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