View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_43 (Length: 338)
Name: NF20116_low_43
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 51293434 - 51293754
Alignment:
| Q |
1 |
attacctccacttacaaacctataatgtttagactttatctcattggaatcttaacaattcaaaccgccaaactatatcttgttgaataagttacatata |
100 |
Q |
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| T |
51293434 |
attacctccacttacaaacctataatgtttagactttatctcattggaatcttaacaattcaaaccgccaaactatatcttgttgaataagttacatata |
51293533 |
T |
|
| Q |
101 |
gtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaatattacgacagaccttctaatcttgttggtgaagtagttagtta |
200 |
Q |
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| T |
51293534 |
gtaatagtagtactaagttaattgatgaaaaattccatagaattattcacatttaatattacgacagaccttctaatcttgttggtgaagtagttagtta |
51293633 |
T |
|
| Q |
201 |
ctctagggttccgagaaagaggaaaccaggaaaggaatnnnnnnngatcacagaaatttgagatgaaaagtgagaaagacatacattcaacaaagttagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51293634 |
ctctagggttccgagaaagaggaaaccaggaaaggaataaaaaaagctcacagaaatttgagatgaaaagtgagaaagacatacattcaacaaagttagg |
51293733 |
T |
|
| Q |
301 |
agcagaagcattaacctaatt |
321 |
Q |
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|||||||||||||| |||||| |
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| T |
51293734 |
agcagaagcattaatctaatt |
51293754 |
T |
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