View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_44 (Length: 334)

Name: NF20116_low_44
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_44
NF20116_low_44
[»] chr3 (29 HSPs)
chr3 (1-318)||(46490850-46491167)
chr3 (91-315)||(46479934-46480164)
chr3 (79-315)||(46498092-46498334)
chr3 (91-315)||(46484192-46484414)
chr3 (86-315)||(46474073-46474302)
chr3 (91-286)||(45883487-45883685)
chr3 (91-286)||(46539170-46539371)
chr3 (84-268)||(5156436-5156629)
chr3 (197-286)||(16025657-16025746)
chr3 (195-286)||(5160447-5160538)
chr3 (94-293)||(46236545-46236753)
chr3 (198-273)||(4581246-4581321)
chr3 (85-147)||(5160595-5160657)
chr3 (107-286)||(46544645-46544830)
chr3 (198-261)||(4613703-4613766)
chr3 (85-163)||(46526167-46526245)
chr3 (185-283)||(46554035-46554133)
chr3 (164-262)||(51944087-51944185)
chr3 (102-147)||(46548765-46548810)
chr3 (91-139)||(4581139-4581187)
chr3 (91-139)||(4613596-4613644)
chr3 (1-53)||(46480202-46480254)
chr3 (6-46)||(51944306-51944346)
chr3 (2-33)||(46544913-46544944)
chr3 (2-33)||(46553855-46553886)
chr3 (197-244)||(47397171-47397218)
chr3 (6-39)||(46506919-46506952)
chr3 (2-31)||(46539443-46539472)
chr3 (6-38)||(47413862-47413894)
[»] chr8 (3 HSPs)
chr8 (93-293)||(21463943-21464149)
chr8 (82-268)||(9675438-9675630)
chr8 (91-268)||(9692469-9692652)
[»] chr4 (4 HSPs)
chr4 (197-283)||(15556188-15556274)
chr4 (82-255)||(35162642-35162821)
chr4 (6-39)||(15556432-15556465)
chr4 (82-139)||(35155744-35155801)
[»] chr2 (1 HSPs)
chr2 (201-286)||(20144802-20144887)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 46491167 - 46490850
Alignment:
Q  1 taaacaagaaagggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagcttcggt 100  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||    
T  46491167 taaacaagaaagggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaatacttcagttgcggtggctgcaacagcttcggt 46491068  T
Q  101 gccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgactagagttcaccattttagtaagacctccattggtgaaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491067 gccttcttcatttacatcaataaaagacttgtgaaatattttagaaatacataggttttgactagagttcaccattttagtaagacctccattggtgaaa 46490968  T
Q  201 ggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacctccactctatcat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46490967 ggtaaaaccacgcccagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacctccactctatcat 46490868  T
Q  301 atggaagcttgtgtttta 318  Q
    ||||||||||||||||||    
T  46490867 atggaagcttgtgtttta 46490850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 46480164 - 46479934
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgacta------gagttcaccattttagtaag 184  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||| ||| ||||||||||||      ||||||||||| || || ||    
T  46480164 cagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgactaactgaagagttcaccatctttgtcag 46480065  T
Q  185 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 284  Q
    |||||||   | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  46480064 acctccaccagagaaaggtaaaaccacacctagctcctttagcatatcagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcacct 46479965  T
Q  285 acctccactctatcatatggaagcttgtgtt 315  Q
    || |||||| || || |||||||||||||||    
T  46479964 acttccactttaccaaatggaagcttgtgtt 46479934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 79 - 315
Target Start/End: Complemental strand, 46498334 - 46498092
Alignment:
Q  79 cggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact------agagttcac 172  Q
    ||||||| ||| |||||| |||||||||||||||||| ||||| ||||||||||| |||||||| |||| | | |||||||||||      |||||||||    
T  46498334 cggtggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgactcacagcagagttcac 46498235  T
Q  173 cattttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatc 272  Q
    ||||||||| | ||||||||| |||||||| ||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||    
T  46498234 cattttagtcaaacctccattagtgaaaggcaaaaccacgccaagctcctttaacatatcagaagtttcaagttcaaatgaaatattgaaccttggaatc 46498135  T
Q  273 ctaaagtcacctacctccactctatcatatggaagcttgtgtt 315  Q
    |||||||||||||| |||||| | |||   |||||||||||||    
T  46498134 ctaaagtcacctacttccactttgtcaagaggaagcttgtgtt 46498092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 46484414 - 46484192
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgactagagttcaccattttagtaagacctcc 190  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || || |  || || |||||| ||||||||||||| || || ||||||||    
T  46484414 cagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattggaca--caaagtttttgattagagttcaccatctttgtcagacctcc 46484317  T
Q  191 attggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctacctcc 290  Q
    |   | ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||    
T  46484316 accagagaaaggtaaaaccacacctagctcctttagcataacagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcacctacttcc 46484217  T
Q  291 actctatcatatggaagcttgtgtt 315  Q
    ||| ||||| | |||||||||||||    
T  46484216 actttatcaaaaggaagcttgtgtt 46484192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 46474302 - 46474073
Alignment:
Q  86 tgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgactagagttcaccattttagtaaga 185  Q
    |||| ||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| || || ||| | || |||||| |||||| ||||||||| || ||     
T  46474302 tgcagcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattggacataaaaagtttttgattagagtccaccatttttgtcagc 46474203  T
Q  186 cctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcaccta 285  Q
    ||| ||   | ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46474202 ccttcaccagagaaaggtaaaaccacacctagctcctttagcatatcggaagtttcaagtccaaatgaaatattgaactttggaatcctaaagtcaccta 46474103  T
Q  286 cctccactctatcatatggaagcttgtgtt 315  Q
    | |||||| ||||| | |||||||||||||    
T  46474102 cttccactttatcaaaaggaagcttgtgtt 46474073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 286
Target Start/End: Original strand, 45883487 - 45883685
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgactag---agttcaccattttagtaagacc 187  Q
    ||||||| |||||||||||||| || ||||| ||||||| |||||| || | ||||||| | |||| |||| | |   ||| ||||||||| || | ||     
T  45883487 cagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttgatttggatagtccaccatttttgtcaaact 45883586  T
Q  188 tccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    ||||   | ||||||| ||||||| |||| |||||||| ||||| |||||||||||| |||||||||| |||||| ||||| || || |||||||||||    
T  45883587 tccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaaatgaaacattgaatcttggaattctgaagtcacctac 45883685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 286
Target Start/End: Complemental strand, 46539371 - 46539170
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact------agagttcaccattttagtaag 184  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||| ||||  |  |||| | | |||||||||||      ||||| ||||||||| || |     
T  46539371 cagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccatttttgtcaa 46539272  T
Q  185 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 284  Q
    |||||| |  | ||||||||||||||  ||||||||||| ||||||| ||||||||||||  |||| ||||| ||||| ||||| || || |||||||||    
T  46539271 acctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagctcaaaagaaattttgaatcttggaattctgaagtcacct 46539172  T
Q  285 ac 286  Q
    ||    
T  46539171 ac 46539170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 5156629 - 5156436
Alignment:
Q  84 gctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggtttt---------gactagagttcacca 174  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||| | | ||| | |         ||  ||||| |||||    
T  5156629 gctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaacagaaaggctattgcccacaagaggagagtccacca 5156530  T
Q  175 ttttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgg 268  Q
    |||| || | |||||||   ||||||||||||| ||| |||||||| || | |||||| |||||||||||  |||||||||| ||||| |||||    
T  5156529 tttttgtcaaacctccacgagtgaaaggtaaaatcactcctagctctttgaacatatcggaagtttcaagctcaaatgaaattttgaatcttgg 5156436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 16025746 - 16025657
Alignment:
Q  197 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    |||||||||||| || || ||||||||||||||||||||||||||||  ||||||||||  ||||||||||| || || || ||||||||    
T  16025746 gaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaaatgaaaccttgaaccttggaattctgaaatcacctac 16025657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 5160538 - 5160447
Alignment:
Q  195 gtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||||||  |||||||||| ||||| ||||| || || || ||||||||    
T  5160538 gtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaatcttggaattctgaattcacctac 5160447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 46236545 - 46236753
Alignment:
Q  94 cttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact---------agagttcaccattttagtaag 184  Q
    |||| ||||||||||||||||| ||||| ||||| ||||||||||| || |||| | ||||||||| ||          ||| | ||| ||||| ||||     
T  46236545 cttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacatataggttttcaccctcaaaagaagaatccacaatttttgtaaa 46236644  T
Q  185 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacct 284  Q
    |||||||   | ||||||||||| ||| |||| |||||||| | ||| || |||||||| |||||| ||||||||||| ||||| ||| | || ||||||    
T  46236645 acctccagcagagaaaggtaaaatcactcctaactccttcatcgtattagtagtttcaattccaaacgaaatattgaatcttggaatcttgaactcacct 46236744  T
Q  285 acctccact 293  Q
    ||| |||||    
T  46236745 accgccact 46236753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 4581246 - 4581321
Alignment:
Q  198 aaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcc 273  Q
    |||||||||||||| |||||||||||||||| |  ||| ||||||||| |||| ||||||||||| ||||| ||||    
T  4581246 aaaggtaaaaccactcctagctccttcagcacactagacgtttcaagttcaaaagaaatattgaatcttggaatcc 4581321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 5160657 - 5160595
Alignment:
Q  85 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 147  Q
    ||||||||||||| |  |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5160657 ctgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaa 5160595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 286
Target Start/End: Complemental strand, 46544830 - 46544645
Alignment:
Q  107 ttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact------agagttcaccattttagtaagacctccattggtgaaa 200  Q
    ||||||||| ||||||||||||||||| ||||| || ||||||   |||||||||        ||||| |||||| || || | ||||||  | | ||||    
T  46544830 ttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatttgtcaaacctcctgtagagaaa 46544731  T
Q  201 ggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    ||||||||||| ||||||||||||||||   ||||||||||||| ||||| | |||||||||  | || || || |||||||||||    
T  46544730 ggtaaaaccactcctagctccttcagcacgccagaagtttcaagcccaaaagcaatattgaatttcggaattcttaagtcacctac 46544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 4613703 - 4613766
Alignment:
Q  198 aaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattga 261  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||  |||| ||||||||||    
T  4613703 aaaggtaaaaccactcctagctccttcagcatactagacgtttcaagctcaaaagaaatattga 4613766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 46526167 - 46526245
Alignment:
Q  85 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact 163  Q
    ||||| |||||||||||||| | |||||||| ||||| | |||||||||||||||||| ||||   | |||||||||||    
T  46526167 ctgcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgact 46526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 46554035 - 46554133
Alignment:
Q  185 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacc 283  Q
    ||||||||| | ||||||||||| ||| || | |||||||||||||| ||||  |||||  ||||| ||||| | ||| ||||| ||||||||||||||    
T  46554035 acctccattagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaaacccaaaagaaatttcgaaacttggaatcctaaagtcacc 46554133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 51944185 - 51944087
Alignment:
Q  164 agagttcaccattttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaa 262  Q
    ||||| ||||||||| |||| |||||||   | ||||||||||||||| ||||||| ||| ||||||  || || ||||||  ||||||||||||||||    
T  51944185 agagtccaccatttttgtaaaacctccaggtgagaaaggtaaaaccactcctagcttctttagcatacgagtagcttcaagctcaaatgaaatattgaa 51944087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 46548765 - 46548810
Alignment:
Q  102 ccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 147  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  46548765 ccttcttcttttacttcaatgaaagacttgtgaaatattttagaaa 46548810  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 4581139 - 4581187
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 139  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4581139 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4581187  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 4613596 - 4613644
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 139  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4613596 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4613644  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46480254 - 46480202
Alignment:
Q  1 taaacaagaaagggtggtcagctacaaagtctagtcgagttggaaaacccatg 53  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||| || ||||    
T  46480254 taaataagaaagggtggtcagctacaaagtctagccgaggtggaatactcatg 46480202  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 51944346 - 51944306
Alignment:
Q  6 aagaaagggtggtcagctacaaagtctagtcgagttggaaa 46  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  51944346 aagaaagggtggtcagctacaaagtctagttgagatggaaa 51944306  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 46544944 - 46544913
Alignment:
Q  2 aaacaagaaagggtggtcagctacaaagtcta 33  Q
    ||||||||||||||||||||||||||||||||    
T  46544944 aaacaagaaagggtggtcagctacaaagtcta 46544913  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 46553855 - 46553886
Alignment:
Q  2 aaacaagaaagggtggtcagctacaaagtcta 33  Q
    ||||||||||||||||||||||||||||||||    
T  46553855 aaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 47397171 - 47397218
Alignment:
Q  197 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaag 244  Q
    ||||||||||| ||| |||| |||||||| ||||||||||||||||||    
T  47397171 gaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaag 47397218  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 46506919 - 46506952
Alignment:
Q  6 aagaaagggtggtcagctacaaagtctagtcgag 39  Q
    ||||| ||||||||||||||||||||||||||||    
T  46506919 aagaatgggtggtcagctacaaagtctagtcgag 46506952  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 46539472 - 46539443
Alignment:
Q  2 aaacaagaaagggtggtcagctacaaagtc 31  Q
    ||||||||||||||||||||||||||||||    
T  46539472 aaacaagaaagggtggtcagctacaaagtc 46539443  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 47413862 - 47413894
Alignment:
Q  6 aagaaagggtggtcagctacaaagtctagtcga 38  Q
    |||||||||||||| ||||||||||||||||||    
T  47413862 aagaaagggtggtcggctacaaagtctagtcga 47413894  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 93 - 293
Target Start/End: Original strand, 21463943 - 21464149
Alignment:
Q  93 gcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttga------ctagagttcaccattttagtaagac 186  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||| || || | | | |||||||||      | ||||| ||||||||| || | |     
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttgagcaattcgagagtccaccatttttgtcaaag 21464042  T
Q  187 ctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    |||| |  | |||||||||||||||||||||||| |||||||||||||||  |||||| ||||| ||||| |||||  | || ||||| |||||||| ||    
T  21464043 ctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaaaagaaatcttgaatttcggaatcctgaagtcaccaac 21464142  T
Q  287 ctccact 293  Q
     ||||||    
T  21464143 ttccact 21464149  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 9675438 - 9675630
Alignment:
Q  82 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgact------agagttcaccat 175  Q
    |||||| | ||||||| |||||||| |||||||| |||||   ||||||||||||||| || |||| | | | || |||||       ||||| ||||||    
T  9675438 tggctgtagcagcttcagtgccttcctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccat 9675537  T
Q  176 tttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgg 268  Q
    ||| || | |||||||   | ||||||||||| ||| ||||||||||||| |||   |||||||||||| ||||||||||  ||||| |||||    
T  9675538 ttttgtcaaacctccagaagagaaaggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttgg 9675630  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 9692469 - 9692652
Alignment:
Q  91 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgac------tagagttcaccattttagtaag 184  Q
    ||||||| |||||||| || ||||| ||||| ||||||||||||||||| || |||| | | |||| |||||       ||||| ||||||||| || |     
T  9692469 cagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaa 9692568  T
Q  185 acctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgg 268  Q
    |||||||   | ||||||||||  ||| |||| |||||||  ||||  |||||||||||| ||||||||||  ||||| |||||    
T  9692569 acctccagaagagaaaggtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaaatgaaaatttgaatcttgg 9692652  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 15556274 - 15556188
Alignment:
Q  197 gaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacc 283  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||| ||||||||| |||| || || ||||||||    
T  15556274 gaaaggtaaaaccactcctaggtccttcagcatatcagaagtttcaaacccaaatgagatattgaactttggaattctgaagtcacc 15556188  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 255
Target Start/End: Complemental strand, 35162821 - 35162642
Alignment:
Q  82 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacataggttttgac------tagagttcaccat 175  Q
    |||||||| ||||| |||||||||  |||||||| ||||| ||||||||||||||||| || ||||   | ||||||||||        |||| ||||||    
T  35162821 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttgaccttcaagtgagtccaccat 35162722  T
Q  176 tttagtaagacctccattggtgaaaggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaa 255  Q
    ||| || | |||||||   | ||||||||||| ||| ||||| |||||||||| |  |||||||||||| ||| ||||||    
T  35162721 ttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagcacacgagaagtttcaagcccatatgaaa 35162642  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 15556465 - 15556432
Alignment:
Q  6 aagaaagggtggtcagctacaaagtctagtcgag 39  Q
    ||||| ||||||||||||||||||||||||||||    
T  15556465 aagaatgggtggtcagctacaaagtctagtcgag 15556432  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 35155801 - 35155744
Alignment:
Q  82 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 139  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  35155801 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 35155744  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 20144887 - 20144802
Alignment:
Q  201 ggtaaaaccacgcctagctccttcagcatatcagaagtttcaagtccaaatgaaatattgaaccttgggatcctaaagtcacctac 286  Q
    ||||||||||| |||| |||||| ||  |||||  ||||||||| |||||||||| |||||| ||||| ||  |||| ||||||||    
T  20144887 ggtaaaaccactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctac 20144802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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