View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_45 (Length: 329)
Name: NF20116_low_45
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 41452474 - 41452780
Alignment:
| Q |
10 |
agaagaaatcagttgcatcgcagagctttgtgcgtgacttgagtaattcatcgggagtagattcatctaagtctcaacagttagtgaaatcttccaaagt |
109 |
Q |
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| T |
41452474 |
agaagaaatcagttgcatcgcagagctttgtgcgtgacttgagtaattcatcgggagtagattcatctaagtctcaacagttagtgaaatcttccaaagt |
41452573 |
T |
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| Q |
110 |
taaagtgaagtctgctcttttgggttcaaaaagcagcagcagcagtt-cattccattcaaatttcaatggaaaggattgatcatcaatgtatactccttg |
208 |
Q |
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| T |
41452574 |
taaagtgaagtctgctcttttgggttcaaaaagcagcagcagcagttgcattccattcaaatttcaatggaaaggatcgataatcaatgtatactccttg |
41452673 |
T |
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| Q |
209 |
gtttaagagttc-cataataccgacaccactctcgagcacgtgcttggtgacaatgcgatgaagcttccacgaggaggtaagatg-catacatgggaaaa |
306 |
Q |
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|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
41452674 |
gtttaatagttctcataataccaacaccactctcgagcacgtgcttggtgacaatgcgatgaagcttccacgaggaggtaagatgccatacatggggcaa |
41452773 |
T |
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| Q |
307 |
tttaaaa |
313 |
Q |
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||||||| |
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| T |
41452774 |
tttaaaa |
41452780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 41441467 - 41441572
Alignment:
| Q |
36 |
tttgtgcgtgacttgagtaattcatcgggagtagattcatctaagtctcaacagttagtgaaatc-ttccaaagttaaagtgaagtctgctcttttgggt |
134 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||| || |||||||||||||||| ||| ||| |
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| T |
41441467 |
tttgggcgtgacttgagtaattcatcgggagtagagtcatctaagtctctacagtttatgaaatctttccatag-taaagtgaagtctgctttttccggt |
41441565 |
T |
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| Q |
135 |
tcaaaaa |
141 |
Q |
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| T |
41441566 |
tcaaaaa |
41441572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Original strand, 33362801 - 33362835
Alignment:
| Q |
145 |
gcagcagcagttcattccattcaaatttcaatgga |
179 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
33362801 |
gcagtagcagttcattccattcaaatttcaatgga |
33362835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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