View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_49 (Length: 302)

Name: NF20116_low_49
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_49
NF20116_low_49
[»] chr6 (15 HSPs)
chr6 (17-287)||(4586721-4586991)
chr6 (17-287)||(4558214-4558484)
chr6 (22-287)||(4572060-4572325)
chr6 (25-260)||(4581111-4581346)
chr6 (44-272)||(4612508-4612736)
chr6 (30-287)||(4599266-4599522)
chr6 (45-281)||(4298273-4298509)
chr6 (76-229)||(4513809-4513962)
chr6 (123-287)||(4488966-4489130)
chr6 (123-287)||(4561857-4562021)
chr6 (123-203)||(4507106-4507186)
chr6 (123-194)||(4471112-4471183)
chr6 (123-190)||(4503159-4503226)
chr6 (123-194)||(4575650-4575721)
chr6 (64-287)||(4623443-4623666)
[»] chr8 (2 HSPs)
chr8 (17-287)||(16685056-16685333)
chr8 (76-194)||(20862666-20862784)
[»] scaffold0288 (1 HSPs)
scaffold0288 (87-272)||(2238-2423)
[»] scaffold0475 (1 HSPs)
scaffold0475 (123-272)||(2016-2165)
[»] chr3 (1 HSPs)
chr3 (46-111)||(1282560-1282625)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 4586721 - 4586991
Alignment:
Q  17 tactaaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4586721 tactaaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtatagtaaaggacat 4586820  T
Q  117 ggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4586821 ggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggaagttc 4586920  T
Q  217 tttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4586921 tttctgattgatttacaaagagcgtaaatgtcttgactaacatcaccatcaccatccgttggagttaaacc 4586991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 4558214 - 4558484
Alignment:
Q  17 tactaaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacat 116  Q
    |||||||||||||| ||||||||||  |||||||| ||| |||| |||||||||||  ||||| |||||||||||||| ||||||||| ||||| |||||    
T  4558214 tactaaaatgaataaaagtcaaaaatgtacatgcattggatggactaaagaaaacagaagggattgaaagttcttcagaagcttgtatggtaaaagacat 4558313  T
Q  117 ggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttc 216  Q
    |  ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4558314 gccaatatcagaaactatgcaagtaactggagggacaagaccagatgttgcagagtcatttagtctagcaagaagttcgcggaaaggttgtaggaagttc 4558413  T
Q  217 tttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4558414 tttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 4558484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 4572060 - 4572325
Alignment:
Q  22 aaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaa 121  Q
    |||||||||| ||||| |||  |||||||| ||| |||| |||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  4572060 aaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgctaa 4572159  T
Q  122 tatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttct 221  Q
    ||||||||||||| ||| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||| ||    
T  4572160 tatcagaaactatgcaactaactggacggacaagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtagaaaattcttcct 4572259  T
Q  222 gattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4572260 gattgatttacaaagagcgtaaatgtcttgactaacatcgccatcgccatccgttggagataaacc 4572325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 4581111 - 4581346
Alignment:
Q  25 tgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatat 124  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||  ||||| || |||    
T  4581111 tgaaaacaagtcaaaaacatacatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatgctattat 4581210  T
Q  125 cagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgat 224  Q
    |||||||||| ||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||| |  |||||||||||| |||||||||||||    
T  4581211 cagaaactatgcaagtaactggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagttctttctgat 4581310  T
Q  225 tgatttacaaagagcgtaaatgtcttgactaacatc 260  Q
    ||||| ||| ||||| || ||||||||| |||||||    
T  4581311 tgattcacatagagcatatatgtcttgattaacatc 4581346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 272
Target Start/End: Complemental strand, 4612736 - 4612508
Alignment:
Q  44 tacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgac 143  Q
    |||||||| |||||||| |||||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||| || |||||| || ||| || || ||    
T  4612736 tacatgcattggctggactaaagaaaacaacagggattgaaagttcttcaccagcttgtatggtaaaagacatgctattatcagcaattatgcacgtaac 4612637  T
Q  144 tggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgattgatttacaaagagcgtaa 243  Q
     ||||||| ||||||||| || ||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||| ||||||||| ||     
T  4612636 cggagggacaagaccagaagtggcagagtcattaagtctagaaataagttcgcgaaaaggttgtaggaagttctttctgattgattcacaaagagcatat 4612537  T
Q  244 atgtcttgactaacatcgccatcaccatc 272  Q
    ||||||||||||||||| |||||||||||    
T  4612536 atgtcttgactaacatcaccatcaccatc 4612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 4599266 - 4599522
Alignment:
Q  30 acaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaa 129  Q
    ||||||||| ||  |||||||| ||| |||| |||||| ||||| ||| |||||||||||||||||| |||||||||||||||||||| |   |||| ||    
T  4599266 acaagtcaagaatgtacatgcattggatggactaaagagaacaataggaagtgaaagttcttcagcaacttgtatagtaaaggacatgttccaatcataa 4599365  T
Q  130 actatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgattgatt 229  Q
     |||  ||||| |||||||||||||||||||  || | ||| ||||  |||||||||||||||||||| || ||||| ||| |||| |||||||||||||    
T  4599366 -ctaagcaagtaactggagggataagaccagcagtagaagactcatagagtctagcaagaagttcgcgaaatggttggaggaagttatttctgattgatt 4599464  T
Q  230 tacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    |||| ||||  |  ||||| ||  ||||||| |||||||||||  |||||||||||||    
T  4599465 tacagagagaatttatgtcctgtgtaacatcaccatcaccatctattggagttaaacc 4599522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 4298509 - 4298273
Alignment:
Q  45 acatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgact 144  Q
    ||||||||| ||||||  ||||| || ||  ||||||| | ||||||| ||||||||||| ||||| |||||   || ||||| |||||  ||||| |||    
T  4298509 acatgcactagctggacaaaagagaataattgggagtgcatgttcttccgcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaact 4298410  T
Q  145 ggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgattgatttacaaagagcgtaaa 244  Q
    || || | ||||||||  || ||||| |||  |||| ||||||||||||| |  || || || ||| ||||||||||||||||||   ||||||     |    
T  4298409 ggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagttcaccaaagggctgaaggaagttctttctgattgattgggaaagagatggta 4298310  T
Q  245 tgtcttgactaacatcgccatcaccatccgttggagt 281  Q
    |||||||| ||||||| |||||||| |||||||||||    
T  4298309 tgtcttgagtaacatctccatcaccttccgttggagt 4298273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 4513962 - 4513809
Alignment:
Q  76 gggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcat 175  Q
    ||||||| ||||||||||||| ||||| ||||||| | |||  ||  |||||||||||  ||||| ||   ||| |||||||| | | ||||||||||||    
T  4513962 gggagtgcaagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaacaaaaggtataagaccggcttttgcagagtcat 4513863  T
Q  176 taagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgattgatt 229  Q
    ||||| |||| | ||||||||| |||||||  | | | ||||||||||||||||    
T  4513862 taagtttagctaaaagttcgcgaaaaggttcgatgcaattctttctgattgatt 4513809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 4489130 - 4488966
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctg 222  Q
    |||||||||||  ||||| |||||||||||||||||||  || ||||||||||||||| ||||||||| | | |  ||   |||  |  | || ||  ||    
T  4489130 atcagaaactaagcaagtaactggagggataagaccagcagtagcagagtcattaagtttagcaagaaatacaccaaagaattggtgaaaattgttcatg 4489031  T
Q  223 attgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    ||||||  ||||||||||   |  |||||||||||||||||||||||||| ||||||||||||||    
T  4489030 attgatagacaaagagcgcgtaaatcttgactaacatcgccatcaccatctgttggagttaaacc 4488966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 4561857 - 4562021
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttc-gcggaaaggttgtaggtagttctttct 221  Q
    |||||||||||  ||||||||||| |||||||||||||  || |||||||| | |||| |||||||||||||  |  | | || || |  ||||| || |    
T  4561857 atcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaagtttagcaagaagttcatcaaagaagtggt-gaaagttcgttat 4561955  T
Q  222 gattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    |||||||| || ||||| ||  | ||||||||||| ||| |||||||||||| |||||||||||||    
T  4561956 gattgattcaccaagagagtgtaggtcttgactaatatcaccatcaccatcctttggagttaaacc 4562021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 4507106 - 4507186
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaagg 203  Q
    |||||||||||  ||||| || ||||| | |||||||||| | |||||||||| ||||||||| ||||||||||| |||||    
T  4507106 atcagaaactaagcaagtaacaggaggcacaagaccagatttcgcagagtcatcaagtctagctagaagttcgcgaaaagg 4507186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 4471112 - 4471183
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttc 194  Q
    |||||||| ||| ||||| |||||||||||||||||||  || |||||| ||| |||||||| |||||||||    
T  4471112 atcagaaattatgcaagtaactggagggataagaccagcagtggcagaggcatcaagtctagtaagaagttc 4471183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 4503226 - 4503159
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaa 190  Q
    |||||||||||  ||||| |||||||||||||||||||  || ||||||||||||||| || ||||||    
T  4503226 atcagaaactaagcaagtaactggagggataagaccagcagtggcagagtcattaagtttaacaagaa 4503159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 4575650 - 4575721
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttc 194  Q
    |||||||||||  ||||||||||| |||||||||||||  || |||||||| | |||| |||||||||||||    
T  4575650 atcagaaactaagcaagtgactggggggataagaccagcagtggcagagtcttgaagtttagcaagaagttc 4575721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 287
Target Start/End: Original strand, 4623443 - 4623666
Alignment:
Q  64 aagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatg 163  Q
    ||||||||||  ||||||| | | ||||||||||||||||| ||||| ||||||  |  ||| |||||||  ||||| ||||| || | ||||||||  |    
T  4623443 aagaaaacaattgggagtgcatgctcttcagcagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcag 4623542  T
Q  164 ttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgcc 263  Q
    | |||||||||| |||| | ||||||||||| |  || || ||   | | ||||| || ||||| | | |||||| |   ||||||||||||||||| ||    
T  4623543 tggcagagtcatgaagttttgcaagaagttcacaaaagggatgatagaaattcttccttattgaatcagaaagagagggtatgtcttgactaacatcacc 4623642  T
Q  264 atcaccatccgttggagttaaacc 287  Q
    |||||| ||| |||| ||||||||    
T  4623643 atcaccttccattggtgttaaacc 4623666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 16685333 - 16685056
Alignment:
Q  17 tactaaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaaggacat 116  Q
    |||||||||||||| |||| |||||  |||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  16685333 tactaaaatgaataaaagttaaaaatgtacatgcattcgatggattaaagagaacaacagggagtgaaagttcttcagcagcttgtatagtaaaagacat 16685234  T
Q  117 ggtaatatcagaaactatacaagtgactggagggataagaccagatg-------ttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtag 209  Q
    | |||||||||||||||| ||||| |||||||||| |||||||||||        ||||  ||||| ||||||||||||| ||||||| || ||||| ||    
T  16685233 gctaatatcagaaactatgcaagtaactggagggacaagaccagatgatgcaccgtgcacggtcatgaagtctagcaagatgttcgcgaaagggttggag 16685134  T
Q  210 gtagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatccgttggagttaaacc 287  Q
    | ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  16685133 gaagttctttctgattgatttacaaagagcgtgtatgtcttgactaacatcgccatcaccatccgttggaggtaaacc 16685056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 20862784 - 20862666
Alignment:
Q  76 gggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcat 175  Q
    ||||||| ||||||||||||| ||||||| ||||  ||||||  | ||||||||||||  ||||| || ||||| |||||||||||| | | ||||||||    
T  20862784 gggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttggaagagtcat 20862685  T
Q  176 taagtctagcaagaagttc 194  Q
     |||| | |||||||||||    
T  20862684 gaagtttggcaagaagttc 20862666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 2423 - 2238
Alignment:
Q  87 ttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagca 186  Q
    |||||||||||||||||| ||||| ||||||  |  |||||||||||  | ||| ||||||||||||||||||||  | ||||| || | ||||||||||    
T  2423 ttcttcagcagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagca 2324  T
Q  187 agaagttcgcggaaaggttgtaggtagttctttctgattgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatc 272  Q
    ||||||||||| ||    || ||| |||| |||||||||||||||||||||| |   ||||||||||||||||  |||||| ||||    
T  2323 agaagttcgcgaaagaagtgaaggaagttttttctgattgatttacaaagagagagtatgtcttgactaacattaccatcatcatc 2238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 272
Target Start/End: Original strand, 2016 - 2165
Alignment:
Q  123 atcagaaactatacaagtgactggagggataagaccagatgttgcagagtcattaagtctagcaagaagttcgcggaaaggttgtaggtagttctttctg 222  Q
    |||||||||||  | ||| ||||||||||||||||||||  | ||||| || | ||||||||||||||||||||| ||    || ||| |||| ||||||    
T  2016 atcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagttcgcgaaagaagtgaaggaagttttttctg 2115  T
Q  223 attgatttacaaagagcgtaaatgtcttgactaacatcgccatcaccatc 272  Q
    |||||||||||||||| |   ||||||||||||||||  |||||| ||||    
T  2116 attgatttacaaagagagagtatgtcttgactaacattaccatcatcatc 2165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 1282560 - 1282625
Alignment:
Q  46 catgcactggctggattaaagaaaacaagagggagtgaaagttcttcagcagcttgtatagtaaag 111  Q
    |||||||| | ||||  ||||| ||||  |||||||| || |||||||||||||||||||||||||    
T  1282560 catgcacttgatggaaaaaagagaacattagggagtgcaaattcttcagcagcttgtatagtaaag 1282625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University