View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_5 (Length: 583)

Name: NF20116_low_5
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_5
NF20116_low_5
[»] chr2 (1 HSPs)
chr2 (1-567)||(14715121-14715700)
[»] chr4 (14 HSPs)
chr4 (268-355)||(23868550-23868637)
chr4 (268-353)||(24307043-24307128)
chr4 (268-346)||(23401901-23401979)
chr4 (268-346)||(23408913-23408991)
chr4 (268-346)||(23885654-23885732)
chr4 (268-346)||(23416079-23416157)
chr4 (268-346)||(26433851-26433929)
chr4 (268-346)||(26435631-26435709)
chr4 (268-346)||(26832562-26832640)
chr4 (268-351)||(23453745-23453828)
chr4 (197-255)||(23415745-23415803)
chr4 (268-316)||(34662414-34662462)
chr4 (197-255)||(24307407-24307465)
chr4 (197-243)||(34662077-34662123)
[»] chr3 (1 HSPs)
chr3 (1-55)||(52951462-52951517)
[»] chr8 (2 HSPs)
chr8 (2-51)||(40709785-40709834)
chr8 (5-37)||(38695690-38695722)
[»] chr1 (2 HSPs)
chr1 (309-346)||(40795629-40795666)
chr1 (2-30)||(32748345-32748373)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 14715700 - 14715121
Alignment:
Q  1 gtgggatccacattaatttcatccaatgagagagtgaatgcttaagaga--------------gtgttacgagcactcctcaaaaattaaaagtctaacg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||              ||||| | ||| ||||||||||||||||| ||||| |    
T  14715700 gtgggatccacattaatttcatccaatgagagagtgaatgctagagagaatattaaaaagaaagtgttgctagccctcctcaaaaattaaaaatctaatg 14715601  T
Q  87 gtgcttcaacataacgatccagcaagcaagaactccaaaacaaccagaagtgtccacaacatagtctcgtgtttaagaacttgtaaactttgtcacaacc 186  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||| |    
T  14715600 gtgcttcaacataacgatccagcaagcaagaacttcaaaacaaccacaagt--ccacaacatagtctcgtgtttaagaacttgtaaaatttgtcacaaac 14715503  T
Q  187 tta-gtagttagtaccctcagacacaacatgcttgcccaattctacaggaagaacaagtctcactgcagttagtacccgcatgagctttctccgcgacag 285  Q
    ||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  14715502 ttaagtagttagtaccctcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagttagcacccgcatgagctttctcctcgacag 14715403  T
Q  286 tggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccatcgaatcgaagaattggtatcagaaaagttctagggtttc 385  Q
    || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14715402 tgtatttcttctcctctgcgggtttcttctcagctggcttcttctctcactttggtgccatcgaatcgaagaattggtatcagaaaagttctagggtttc 14715303  T
Q  386 gaattgggaatggaaattggagttggaagaattgcaagaaaccggatgtggatcttcaaattgtgagttaacaacttaatctcctaatgatgacccgatt 485  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14715302 gaattgggaatggaaattggagttggaagaattgaaagaaaccggttgtggatcttcaaattgtgagttaacaacttaatctcctaatgatgacccgatt 14715203  T
Q  486 ttgtttcttttgaaaataatggatttgaacccttcttttgattttgcaatggttatgggtatggtggagtgaatgaatttgg 567  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  14715202 ttgtttctttttaaaataatggatttgaacccttcttttgattttgcgatggttatgggtatggtggagttaatgaatttgg 14715121  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 23868637 - 23868550
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccatcgaatcgaa 355  Q
    |||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  23868637 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctccgctggcttcttctctccctttggtgccattgaatcgaa 23868550  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 24307128 - 24307043
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccatcgaatcg 353  Q
    |||| ||||| ||||| ||||| |||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||| ||||||    
T  24307128 gagccttctcggcgacggtggacttcttctcctctgcgggtttcttctctgctggcttcttctctccctttggcgccattgaatcg 24307043  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 23401979 - 23401901
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||| ||||| ||||| ||||| ||||||||||  |||||||||||||| |||||||||||||||| ||||||||||||    
T  23401979 gagccttctcggcgacggtggacttcttctcctcagcgggtttcttctccgctggcttcttctctccctttggtgccat 23401901  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 23408913 - 23408991
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||| ||||| ||||| ||||| ||||||||||  |||||||||||||| |||||||||||||||| ||||||||||||    
T  23408913 gagccttctcggcgacggtggacttcttctcctcagcgggtttcttctccgctggcttcttctctccctttggtgccat 23408991  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 23885732 - 23885654
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||||||||| ||||| ||||| ||||||||||  || ||||||||||| |||||||||||||||| ||||||||||||    
T  23885732 gagctttctcggcgacggtggacttcttctcctcagctggtttcttctctgctggcttcttctctccctttggtgccat 23885654  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 23416079 - 23416157
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||||||||| || || ||||| ||||||||||  || ||||||||||| |||||||||||||||| ||||||||||||    
T  23416079 gagctttctcggcaacggtggacttcttctcctcagctggtttcttctccgctggcttcttctctccctttggtgccat 23416157  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 26433929 - 26433851
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||||||||| ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||||||  ||||| |||||    
T  26433929 gagctttctcagcgacggtggacttcttctcctctgctggtttcttctctgctggcttcttctctccttttggcgccat 26433851  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 26435709 - 26435631
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||||||||| ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||||||  ||||| |||||    
T  26435709 gagctttctcagcgacggtggacttcttctcctctgctggtttcttctctgctggcttcttctctccttttggcgccat 26435631  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 26832640 - 26832562
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccat 346  Q
    |||||||||| ||||| ||||| |||||||||| ||| ||||||||||| ||||||||||||||||  ||||| |||||    
T  26832640 gagctttctcagcgacggtggacttcttctcctctgctggtttcttctctgctggcttcttctctccttttggcgccat 26832562  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 23453745 - 23453828
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctcagctggcttcttctctcactttggtgccatcgaat 351  Q
    |||||||||| || || ||||| ||||||||||  || ||||||||||| |||||||||||||||| |||||| ||||| ||||    
T  23453745 gagctttctcggcaacggtggacttcttctcctcagcaggtttcttctccgctggcttcttctctccctttggcgccattgaat 23453828  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 23415745 - 23415803
Alignment:
Q  197 gtaccctcagacacaacatgcttgcccaattctacaggaagaacaagtctcactgcagt 255  Q
    ||||||||||| ||| |||||||| |||||||  |||||||||||||||| ||||||||    
T  23415745 gtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 23415803  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 34662414 - 34662462
Alignment:
Q  268 gagctttctccgcgacagtggatttcttctcctttgcgggtttcttctc 316  Q
    |||||||||| ||||| |||||||||||||||| ||| |||||||||||    
T  34662414 gagctttctcggcgacggtggatttcttctcctctgcaggtttcttctc 34662462  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 24307465 - 24307407
Alignment:
Q  197 gtaccctcagacacaacatgcttgcccaattctacaggaagaacaagtctcactgcagt 255  Q
    ||||||||||| ||| |||||||| |||||||  |||||||||||||||| || |||||    
T  24307465 gtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagt 24307407  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 243
Target Start/End: Original strand, 34662077 - 34662123
Alignment:
Q  197 gtaccctcagacacaacatgcttgcccaattctacaggaagaacaag 243  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||    
T  34662077 gtaccctcagacacagcatgcttagccaattctccaggaagaacaag 34662123  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52951462 - 52951517
Alignment:
Q  1 gtgggatccacatta-atttcatccaatgagagagtgaatgcttaagagagtgtta 55  Q
    ||||||||||||||  |||||||||||||||||||||| ||||  |||||||||||    
T  52951462 gtgggatccacatttgatttcatccaatgagagagtgagtgctagagagagtgtta 52951517  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 40709834 - 40709785
Alignment:
Q  2 tgggatccacattaatttcatccaatgagagagtgaatgcttaagagagt 51  Q
    ||||||||||||| |||||| ||||||||||||||| || | ||||||||    
T  40709834 tgggatccacattgatttcacccaatgagagagtgagtgttaaagagagt 40709785  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 38695722 - 38695690
Alignment:
Q  5 gatccacattaatttcatccaatgagagagtga 37  Q
    ||||||||||||||||||||||| |||||||||    
T  38695722 gatccacattaatttcatccaataagagagtga 38695690  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 40795666 - 40795629
Alignment:
Q  309 ttcttctcagctggcttcttctctcactttggtgccat 346  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  40795666 ttcttctcagcgggcttcttctctccctttggtgccat 40795629  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 32748373 - 32748345
Alignment:
Q  2 tgggatccacattaatttcatccaatgag 30  Q
    |||||||||||||||||||||||||||||    
T  32748373 tgggatccacattaatttcatccaatgag 32748345  T

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