View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_51 (Length: 296)
Name: NF20116_low_51
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 96 - 287
Target Start/End: Original strand, 21578540 - 21578728
Alignment:
| Q |
96 |
accaccattggatgtatattggtatttttaaggtgtttatgagcaaaaatgaaagcgagaagagtaattacctatannnnnnnaaggaagtaataattgc |
195 |
Q |
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| T |
21578540 |
accaccattggatgtatattggtatttttaaggtgtttaggagcaaaaatgaaagcgagaagagtaattacctatatttttttaaggatg---taattgc |
21578636 |
T |
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| Q |
196 |
ctattatataatgcaaagtgtagcataacaaatttgtttaatatgcgttcttcgnnnnnnngttgtttaatatacggaaatgaaaaataata |
287 |
Q |
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| T |
21578637 |
ctattatataatgcaaagtgtagcataacaaatttgtttaatatgcgttcttcaaaaaagaattgtttaatatgcggaaatgaaaaataata |
21578728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 21578409 - 21578494
Alignment:
| Q |
1 |
gtacgcattatataggatctagctcttcccactttcatttttgctccaaaacacctcaaaaataccaaaataccctcaacgatagt |
86 |
Q |
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| T |
21578409 |
gtacgcattatataggatctagctcttcccactttcatttttgctccaaaacacctcaaaaatatcaaaataccctcaacgatagt |
21578494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 21578603 - 21578553
Alignment:
| Q |
23 |
ctcttcccactttcatttttgctccaaaacacctcaaaaataccaaaatac |
73 |
Q |
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| T |
21578603 |
ctcttctcgctttcatttttgctcctaaacaccttaaaaataccaatatac |
21578553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 38869982 - 38870042
Alignment:
| Q |
15 |
ggatctagctcttcccactttcatttttgctccaaaacacctcaaaaataccaaaataccc |
75 |
Q |
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| T |
38869982 |
ggatcttgctcttctcattttcatttttgctccaaaacaacgcaaaaataccaaaataccc |
38870042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 33220519 - 33220467
Alignment:
| Q |
22 |
gctcttcccactttcatttttgctccaaaacacctcaaaaataccaaaatacc |
74 |
Q |
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| T |
33220519 |
gctcttctcaccatcatttttgttccaaaacaccataaaaataccaaaatacc |
33220467 |
T |
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