View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_52 (Length: 292)
Name: NF20116_low_52
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 274
Target Start/End: Complemental strand, 33483248 - 33482985
Alignment:
| Q |
11 |
cacagatccacagccattgagtaatgggtagcccccaaaaggacttcaggtgctctataccacagggttagtatctgaaaatgacacaaaagtaatgcaa |
110 |
Q |
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| T |
33483248 |
cacatatccacagccattgagtaatgggtagcccccaaaaggacttcaggtgctctataccacagggttagtatctgaaaatgacacaaacgtaatgcaa |
33483149 |
T |
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| Q |
111 |
tcagccacaattgtggatcatgacaccctgaatgcaaaaccaacaagggggcaaaatctaaaaatatatctctctttaacatcaacattgtcacaaccca |
210 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
33483148 |
tcagccacaagtgaggatcatgacaccctgaatgcaaaaccaacaagggggcaaaatctaaaaatctatctctctttaacatcaacattgtcacaaccta |
33483049 |
T |
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| Q |
211 |
atcacagaccataatataggcataggctaatttcaactcaacttatatgtagcttaacaatcct |
274 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33483048 |
atcacagacaataacctaggcataggctaatttcaactcaacttatatgtagcttaacaatcct |
33482985 |
T |
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