View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_53 (Length: 290)
Name: NF20116_low_53
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 2074367 - 2074553
Alignment:
| Q |
29 |
atccaatatattaactttgaaccaaacaagcacataaatatactaatcaatagtactattaagtattatccaacgaatgatggtacaactcatgaagagt |
128 |
Q |
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| T |
2074367 |
atccaatatattaactttgaaccaaacaagcacataaatatactaatcaatagtactattaagtattatccaacgaatgatggtacaactcatgaagagt |
2074466 |
T |
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| Q |
129 |
tgactcacactttgcaaatacatagacttaacttcagataaaaatctatttgatgaacaatctcaacgttctctaaccatgaatatt |
215 |
Q |
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| T |
2074467 |
tgactcacactttgcaaatacatagacttaacttcagataaaaatctatttgatgaacaatctcaacgttctctaaccatgaatatt |
2074553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 2074577 - 2074610
Alignment:
| Q |
242 |
aggaaaatatttattcaactttgatgagcctttg |
275 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2074577 |
aggaaaatatttattcaactttgatgagcctttg |
2074610 |
T |
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