View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_54 (Length: 284)
Name: NF20116_low_54
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 271
Target Start/End: Original strand, 46960610 - 46960877
Alignment:
| Q |
4 |
tcattattacatctaatagattcataactagtatatcatcagatcagagaaatgaactgttttgcttttgctccatattttgaagcgccactaaccgttg |
103 |
Q |
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| T |
46960610 |
tcattattacatctaatagattcataactagtatatcatcagatcagagaaatgaactgttttgcttttgctccatattttgaagcgccactaaccgttg |
46960709 |
T |
|
| Q |
104 |
gagcaggatgacatggctgcaaaaggaaattttcaagtcattatatgatcacttagtttaactgatgaataaacttcaattaatacaaaattaagtttgt |
203 |
Q |
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| T |
46960710 |
gagcaggatgacatggctgcaaaaggaaattttcaagtcattatatgatcacttagtttaactgatgaataaacttcaattaatacgaaattaagtttgt |
46960809 |
T |
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| Q |
204 |
gagaaagcaatacatttgtggtgttaatcttgcaagatctggaccaccattcttgtcccattccatct |
271 |
Q |
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| T |
46960810 |
gagaaagcaatacatttgtggtgttaatcttgcaagatctggaccaccattcttgtcccattccatct |
46960877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 44520922 - 44520677
Alignment:
| Q |
16 |
ctaatagattcataactagtatatcatcagatcagagaaatgaactgttttgcttttgctccatattttgaagcgccactaaccgttggagcaggatgac |
115 |
Q |
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|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
44520922 |
ctaatagattcataactaatgtatcatcagattagagaaatgaactgttttgct------ccatattttgaagcgccactaaccgttggagcaggaagac |
44520829 |
T |
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| Q |
116 |
atggctgcaaaaggaaattttcaagtcattatatgatcacttagtttaactgatgaataaacttcaatta-atacaaaattaagtttgtgagaaagcaat |
214 |
Q |
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||||||||||||||| ||||| ||||||| || ||||||||| ||| |||| ||||||||||| || ||| ||| ||||||| ||||| |||||| |
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| T |
44520828 |
atggctgcaaaaggagattttgaagtcatcat-----cacttagttaaaccgatgcataaacttcaactacatatgaaaataagtttctgagatagcaat |
44520734 |
T |
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| Q |
215 |
acatttgtggtgttaatcttgcaagatctggaccaccattcttgtcccattccatct |
271 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44520733 |
acattagtggtgttgatcttgcaagatctggaccaccattcctgtcccattccatct |
44520677 |
T |
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