View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_58 (Length: 276)
Name: NF20116_low_58
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 1911474 - 1911726
Alignment:
| Q |
22 |
ttgctacatttatttatatatttattttatcatcatttctcatgcaacatatgggttccattattacatataaccggtgcattgcaccggtatataacta |
121 |
Q |
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| T |
1911474 |
ttgctacatttatttatatatttattttatcatcatttctcatgcaacatatgggttccattattacatataaccggtgcattgcaccggtatataacta |
1911573 |
T |
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| Q |
122 |
gtattaatataagaaagtaatcaaac--------------------tatatatatattgcatgcattccacgtactaattaaacacacactgtgtaacct |
201 |
Q |
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| T |
1911574 |
gtattaatataagaaagtaatcaaactatatatatatatatatatatatatatatattgcatgcattccacgtactaattaaacacacactgtgtaacct |
1911673 |
T |
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| Q |
202 |
tgtagagtacaaaagtcaaaggaagatgaacaagtgaaagtgtgtttaaggac |
254 |
Q |
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| T |
1911674 |
tgtagagtacaaaagtcaaaggaagatgaacaagtgaaagtgtgtttaaggac |
1911726 |
T |
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