View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_59 (Length: 275)
Name: NF20116_low_59
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_59 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 44615823 - 44616081
Alignment:
| Q |
16 |
attttgtgtgttaatgtttggaaaatgaaatagacttaaaatttgtttagnnnnnnngttaacacaagaacttatttagcctacattatagaagtttaaa |
115 |
Q |
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| T |
44615823 |
attttgtgtgttaatgtttggaaaatgaaatagacttgaaatttgtttagtttttt-gttaacacaagaacttatttagcctacattatagaagtttaaa |
44615921 |
T |
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| Q |
116 |
tgatgtgaatttttcttacaccttgcagattttgttgagaaatattcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagtttct |
215 |
Q |
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| T |
44615922 |
tgatgtgaatttttcttacaccttgcagattttgttgagaaatattcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagtttct |
44616021 |
T |
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| Q |
216 |
gcactagaaaattttattgtggaaacctgctagtaggatttgactgccactgttggattc |
275 |
Q |
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| T |
44616022 |
gcactagaaaaatttattgtggaaacctgctaataggatttgactaccactgttggattc |
44616081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 44748520 - 44748663
Alignment:
| Q |
80 |
caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttg |
178 |
Q |
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| T |
44748520 |
caagaacttatgtagcctacattctagaagtttttatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg |
44748619 |
T |
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| Q |
179 |
attcagttaattggccgagaaggatcaacaagtttctgcactag |
222 |
Q |
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| T |
44748620 |
attcagttacttgattgggaagaatcaacaagtttttgcactag |
44748663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 44625131 - 44625235
Alignment:
| Q |
115 |
atgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagttt |
213 |
Q |
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| T |
44625131 |
atgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagttt |
44625230 |
T |
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| Q |
214 |
ctgca |
218 |
Q |
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| T |
44625231 |
ttgca |
44625235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 44749314 - 44749217
Alignment:
| Q |
125 |
tttttcttacaccttgcagattttgttgagaaatat-tcaagatgaagaaatttgattcagttaattggccgagaaggatcaacaagtttctgcactag |
222 |
Q |
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| T |
44749314 |
ttttttttacacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactag |
44749217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 3506 - 3434
Alignment:
| Q |
79 |
acaagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgtt |
151 |
Q |
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| T |
3506 |
acaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt |
3434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 44947527 - 44947455
Alignment:
| Q |
79 |
acaagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgtt |
151 |
Q |
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| T |
44947527 |
acaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt |
44947455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 17061055 - 17061091
Alignment:
| Q |
23 |
gtgttaatgtttggaaaatgaaatagacttaaaattt |
59 |
Q |
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| T |
17061055 |
gtgttaatttttggaaaatgaaatagactcaaaattt |
17061091 |
T |
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