View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_62 (Length: 273)
Name: NF20116_low_62
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 5182005 - 5181755
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
103 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5182005 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcattctttttgttaattatttaaaatttaaaatc |
5181906 |
T |
|
| Q |
104 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |
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| T |
5181905 |
aatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5181806 |
T |
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| Q |
204 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
254 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
5181805 |
ttgagccgttcatttgattatttcttaaacttaacattttcaagtttttca |
5181755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 5159757 - 5159520
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatca |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5159757 |
gacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacattaattaacttatttcattgtttttgttaattatttaaaatttaaaatca |
5159658 |
T |
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| Q |
105 |
ataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaat |
204 |
Q |
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| T |
5159657 |
ataaaaaagttatcttcattgtaacaatccatccc------------gtgaagcagttatgaattaattatttgtgtttggtagtattcataccttcaat |
5159570 |
T |
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| Q |
205 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
254 |
Q |
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| T |
5159569 |
tgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
5159520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 5195403 - 5195153
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaa-gtttttccaatggcgtcaatatatacatcaa----cttatttcattgtttttgttaattatttaaaatgtaaaatc |
103 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| |||||| |
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| T |
5195403 |
gacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaattaacttatttcgttgtttttgttaattatttaaaatttaaaata |
5195304 |
T |
|
| Q |
104 |
aataaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagcagttatgaattaattatttgtgtttggtagtattcataccttgaa |
203 |
Q |
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| T |
5195303 |
aaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagcaattatgaattaattatttgtgtttggtagtattgataccttcaa |
5195204 |
T |
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| Q |
204 |
ttgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
254 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||||| ||||||| |
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| T |
5195203 |
ttgagccgttcatttgattatcgtttaaacttaacattttcaaatttttca |
5195153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 5172594 - 5172506
Alignment:
| Q |
166 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
254 |
Q |
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| T |
5172594 |
aattaattatttatgtttgatagtattgataccttcaattgagccgttcatttgattatagcttaaacttaacattttcaattttttca |
5172506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 4843028 - 4843116
Alignment:
| Q |
166 |
aattaattatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagtttttca |
254 |
Q |
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| T |
4843028 |
aattaattatttatgtttgatagtattgataccttcaattgagcccttcatttgattatcgcttaaccttaacattttcaagtttttca |
4843116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 5212815 - 5212736
Alignment:
| Q |
171 |
attatttgtgtttggtagtattcataccttgaattgagccgttcatttgattatagcttaaagttaacattttcaagttt |
250 |
Q |
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| T |
5212815 |
attatttgtgtttggtaatattaataccttcaagtgagccgttcatttgattgttgcataaacttagcattttcaagttt |
5212736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 4842849 - 4842927
Alignment:
| Q |
10 |
acatcatcataaaaatcttaaagtttttccaatggcgtcaatatatacatca----acttatttcattgtttttgttaa |
84 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||| |
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| T |
4842849 |
acattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatttacttatttcattgtttttgttaa |
4842927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 5172677 - 5172630
Alignment:
| Q |
9 |
gacatcatcataaaaatcttaaagtttttccaatggcgtcaatatata |
56 |
Q |
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| T |
5172677 |
gacattatcataaaaatcttaaagtttttccaatggactcaatatata |
5172630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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