View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_63 (Length: 272)
Name: NF20116_low_63
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 36328521 - 36328776
Alignment:
| Q |
1 |
tagaccgcgtgaagtgagaatgagtttactctaatgtagtacattggaaaatatactcttcccgtacatgttaacttgtgtgagtttacattatctcata |
100 |
Q |
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| T |
36328521 |
tagaccgcgtgaagtgagaatgagtttactctaacatggcacgttggaaactatactcttcacgtacatgttaacttgtgtgagtttacattatctcata |
36328620 |
T |
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| Q |
101 |
acgagccaccactgacatgggcaaattaagttcatatgatcttaaatgaccgtctaatgagctctcttggtattaaccacataattgaattcaactcttt |
200 |
Q |
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| T |
36328621 |
acgagccaccactgacatggacaaattaagttcatatgatcttatttgaccgtctaatgagctctcttggtattaaccatataattgaattcaactcttt |
36328720 |
T |
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| Q |
201 |
cttttttggttttaagagcccaacaaattcacacccactaaatacatagaattatg |
256 |
Q |
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| T |
36328721 |
cttttttggttttaagagcccaacaaattcacacccactaaatacatagaattatg |
36328776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 36318262 - 36318498
Alignment:
| Q |
11 |
gaagtgagaatgagtttactct-aatgtagtacattggaaaatatactcttcccgta-catgttaacttgtgtgagtttacattatctcataacgagcca |
108 |
Q |
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| T |
36318262 |
gaagtgagaatgagtttactcttaatgcggtatattggagattatactcttccaatatcatgttaacttatgtgagtttacattatcttctaaagagcca |
36318361 |
T |
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| Q |
109 |
ccactgacatgggcaaattaagttcatatgatcttaaatgaccgtctaatgagctctcttggtattaaccacataattgaattcaactctttcttttttg |
208 |
Q |
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| T |
36318362 |
acactaacatgggcaaattaagttcatatgatcttatttgatcgtctaatgagctctcttaatatataccacataaatgaattcaactctttcttttttg |
36318461 |
T |
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| Q |
209 |
gttttaagagcccaacaaattcacacccactaaatacat |
247 |
Q |
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| T |
36318462 |
gtttcaagag--cacgaaattcacacgcactaaatacat |
36318498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 36325614 - 36325729
Alignment:
| Q |
103 |
gagccaccactgacatgggcaaattaagttcatatgatcttaaatgaccgtctaatgagctctcttggtattaaccacataattgaattcaactctttct |
202 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
36325614 |
gagccaacactaacatgggcaaattaagttcatatgatcttatttgatcgtctaataagctctcttaatattaaccacataaatgaattcaactctttct |
36325713 |
T |
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| Q |
203 |
tttttggttttaagag |
218 |
Q |
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| T |
36325714 |
tttttggtttcaagag |
36325729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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