View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_65 (Length: 269)
Name: NF20116_low_65
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_65 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 24422113 - 24422347
Alignment:
| Q |
1 |
tatttgtgaaaacgcgtcaaagcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtga |
100 |
Q |
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| T |
24422113 |
tatttgtgaaaacgcgtcaaagaaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtga |
24422212 |
T |
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| Q |
101 |
aacttatgataaagtcaaattaattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatcc |
200 |
Q |
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| T |
24422213 |
aacatatgataaagtcaaattaattccaaatttgccagaattctctaatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatcc |
24422312 |
T |
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| Q |
201 |
aaatttggactaaatacatatacagttttgcttat |
235 |
Q |
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| T |
24422313 |
aaatttggactaaatacatatacaaatttgcttat |
24422347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 24469638 - 24469414
Alignment:
| Q |
22 |
gcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtgaaacttatgataaagtcaaatt |
121 |
Q |
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| T |
24469638 |
gcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaactcaagtgtgaaacatttgataaagtcaaatt |
24469539 |
T |
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| Q |
122 |
aattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatat |
221 |
Q |
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| T |
24469538 |
aatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgcatttaatcaaaatttggactaaatacatat |
24469443 |
T |
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| Q |
222 |
acagttttgcttatgatacatgtaatatg |
250 |
Q |
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| T |
24469442 |
acagttttgcttatgatacatgtaatatg |
24469414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 24406887 - 24406959
Alignment:
| Q |
66 |
agaattggcaagcatgattgagagcc-caagtgtgaaacttatgataaagtcaaattaattccaaatttgcca |
137 |
Q |
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| T |
24406887 |
agaactggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaattcaaaacttgcca |
24406959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 3898 - 3674
Alignment:
| Q |
22 |
gcaggtgtatttcaaattagtatatcctttgtcttttagatagaagaattggcaagcatgattgagagcccaagtgtgaaacttatgataaagtcaaatt |
121 |
Q |
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| T |
3898 |
gcaggtgtatttcaaattagtatatcctttggcttttagagagaagaattggcaagcatgattgagaactcaagtgtgaaacatttgataaagtcaaatt |
3799 |
T |
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| Q |
122 |
aattccaaatttgccataattctctcatgttcaaatggaataaaatatatgtaaaagaagtaagtagtacatttaatccaaatttggactaaatacatat |
221 |
Q |
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| T |
3798 |
aatttccatttttacagaattttctaatgatcaattgaaataaaatatacgtaaaaga----agtagtgcatttaatcaaaatttggactaaatacatat |
3703 |
T |
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| Q |
222 |
acagttttgcttatgatacatgtaatatg |
250 |
Q |
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| T |
3702 |
acagttttgcttatgatacatgtaatatg |
3674 |
T |
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