View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20116_low_67 (Length: 260)

Name: NF20116_low_67
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20116_low_67
NF20116_low_67
[»] chr6 (6 HSPs)
chr6 (23-250)||(702278-702505)
chr6 (18-250)||(717575-717807)
chr6 (18-250)||(710542-710774)
chr6 (18-250)||(712933-713165)
chr6 (18-250)||(716791-717020)
chr6 (146-250)||(722675-722779)
[»] chr1 (1 HSPs)
chr1 (28-250)||(35313621-35313843)
[»] chr5 (2 HSPs)
chr5 (124-243)||(20357809-20357928)
chr5 (137-243)||(20353927-20354033)
[»] chr4 (3 HSPs)
chr4 (124-243)||(5278442-5278561)
chr4 (124-243)||(5286423-5286542)
chr4 (137-243)||(5282535-5282641)
[»] chr2 (1 HSPs)
chr2 (107-243)||(6235378-6235514)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 23 - 250
Target Start/End: Original strand, 702278 - 702505
Alignment:
Q  23 tccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatccaaata 122  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  702278 tccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaata 702377  T
Q  123 cagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702378 cagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacc 702477  T
Q  223 aattggaaacacaaaaacatctcctttg 250  Q
    ||||||||||||||| ||||||||||||    
T  702478 aattggaaacacaaacacatctcctttg 702505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 717575 - 717807
Alignment:
Q  18 tgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatcc 117  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  717575 tgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatcc 717674  T
Q  118 aaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717675 aaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 717774  T
Q  218 agaccaattggaaacacaaaaacatctcctttg 250  Q
    |||||||||||||||||||| ||||||||||||    
T  717775 agaccaattggaaacacaaacacatctcctttg 717807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 710542 - 710774
Alignment:
Q  18 tgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatcc 117  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  710542 tgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatcc 710641  T
Q  118 aaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710642 aaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 710741  T
Q  218 agaccaattggaaacacaaaaacatctcctttg 250  Q
    |||||||||||||||||||| ||||||||||||    
T  710742 agaccaattggaaacacaaacacatctcctttg 710774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 713165 - 712933
Alignment:
Q  18 tgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatcc 117  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  713165 tgttgtccacccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggattagatcc 713066  T
Q  118 aaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  713065 aaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaagtgaatg 712966  T
Q  218 agaccaattggaaacacaaaaacatctcctttg 250  Q
    || ||||||||||||||||| ||||||||||||    
T  712965 aggccaattggaaacacaaacacatctcctttg 712933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 717020 - 716791
Alignment:
Q  18 tgttatccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatcc 117  Q
    |||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| || ||||||| ||||||||| ||||   ||||||| ||    
T  717020 tgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---gattagaccc 716924  T
Q  118 aaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatg 217  Q
    ||||||  | |||  ||| ||||| || | || ||| |||||| ||||||||| |||  |||| ||||||||||  |||| |||   ||||||||||||     
T  716923 aaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttggaagtgaata 716824  T
Q  218 agaccaattggaaacacaaaaacatctcctttg 250  Q
    |||||||||||||||||||| ||||||||||||    
T  716823 agaccaattggaaacacaaagacatctcctttg 716791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 722779 - 722675
Alignment:
Q  146 cctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaaaacatctc 245  Q
    ||||||||||| ||||||| ||||| ||| ||||| |||||||||| |||   |||    | ||||||||||||||||||||||||||||||||||||||    
T  722779 cctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctc 722680  T
Q  246 ctttg 250  Q
    |||||    
T  722679 ctttg 722675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 35313843 - 35313621
Alignment:
Q  28 ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagcttttgtgagaacttctgaagagatttttggattagatccaaatacagca 127  Q
    ||||||||| |||||||||| ||| | || ||| || || |||||||| ||||| |||||||||||  |||| |||  ||| ||||||||||| ||||||    
T  35313843 ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca 35313744  T
Q  128 ttagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattg 227  Q
    || ||||| || || || || || |||||||| ||||| |||||||| ||||  || |  ||||| || || ||||||||||||||||||||||| ||||    
T  35313743 tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatgagaccgattg 35313644  T
Q  228 gaaacacaaaaacatctcctttg 250  Q
    |||||||||| ||||| ||||||    
T  35313643 gaaacacaaatacatcacctttg 35313621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 20357809 - 20357928
Alignment:
Q  124 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 223  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| ||||||    
T  20357809 agcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaataagacca 20357908  T
Q  224 attggaaacacaaaaacatc 243  Q
    ||||| |||||||| |||||    
T  20357909 attgggaacacaaacacatc 20357928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 20354033 - 20353927
Alignment:
Q  137 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 236  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||||||| |||||||    
T  20354033 gtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa 20353934  T
Q  237 aaacatc 243  Q
    | |||||    
T  20353933 acacatc 20353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 5278442 - 5278561
Alignment:
Q  124 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 223  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5278442 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagacca 5278541  T
Q  224 attggaaacacaaaaacatc 243  Q
    ||||| |||||||| |||||    
T  5278542 attgggaacacaaacacatc 5278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 243
Target Start/End: Original strand, 5286423 - 5286542
Alignment:
Q  124 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 223  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5286423 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaataagacca 5286522  T
Q  224 attggaaacacaaaaacatc 243  Q
    ||||| |||||||| |||||    
T  5286523 attgggaacacaaacacatc 5286542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 5282641 - 5282535
Alignment:
Q  137 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 236  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| |||||||| || |||||||    
T  5282641 gtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccaatcgggaacacaa 5282542  T
Q  237 aaacatc 243  Q
    | |||||    
T  5282541 acacatc 5282535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 243
Target Start/End: Original strand, 6235378 - 6235514
Alignment:
Q  107 ggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaatt 206  Q
    |||||||||  ||| | |||||| ||||  ||||| || ||||| ||||| ||||||||||||||||||||||| || || |||||||||||||| | ||    
T  6235378 ggattagatttaaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatttagtt 6235477  T
Q  207 ggaagtgaatgagaccaattggaaacacaaaaacatc 243  Q
    | || ||||| ||||||||||| |||||||| |||||    
T  6235478 gaaaatgaataagaccaattgggaacacaaacacatc 6235514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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