View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_68 (Length: 258)
Name: NF20116_low_68
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 6587167 - 6586951
Alignment:
| Q |
6 |
gagagagatgaaaaggtgaaagttctaattccatgagttgatggggttaa-tatccttgatttgatagggacttgtgtggtgctttacttcattatatac |
104 |
Q |
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| T |
6587167 |
gagagtgatgaaaaggtgaaagttctaattccatgagttgatggggttaaatatccttgatttgataggaacctgtgtggtgctttacttcattatatac |
6587068 |
T |
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| Q |
105 |
acatggctacttctacttgtgtgacaaagaatctaccataggcccatacagataagccgatcagtgccaaaagtgggaccacgagaattagagggggaaa |
204 |
Q |
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| T |
6587067 |
acatggctacttctacttgtgtgacaaagaatctaccataggcccatacagataagccgatcagtgccaaaagtgggaccacgagaattagagggggaaa |
6586968 |
T |
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| Q |
205 |
atgggggaggaatgtga |
221 |
Q |
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| T |
6586967 |
atgagggaggaatgtga |
6586951 |
T |
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