View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20116_low_7 (Length: 552)
Name: NF20116_low_7
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 233 - 514
Target Start/End: Complemental strand, 7195455 - 7195174
Alignment:
| Q |
233 |
tatatattaagtatattaacacttttgtatggaagaaacatgttgtgcctcgtgcattctttcaatagtgattaactattttttcttttgatttgggggg |
332 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7195455 |
tatatattaagtatagtaacacttttgtatggaagaaacatgttgtgcctcgtgcattctttcaatagtgattaactattttttcttttgatttgggggg |
7195356 |
T |
|
| Q |
333 |
taagccacatcattggtgggggccaattagtattttagttggatgctaatggggcaaaattaactattgcatactgtatattaaacgtgagttcatgttc |
432 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7195355 |
taacccacatcattggtgggggccaattagtattttagttggatgctaatggggcaaaattaactattgcatactgtatactaaacgtgagttcatgttc |
7195256 |
T |
|
| Q |
433 |
atgataaggaaataatctctctatcaaaaatcttagcaaaacactttccagcgcatacttctcaatgtagtaaagctcaact |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
7195255 |
atgataaggaaataatctctctatcaaaaatcttagcaaaacactttccagcacatacttctcaacgtagtaaagctcaact |
7195174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 7195891 - 7195772
Alignment:
| Q |
122 |
tatgagttggtatatctgcaccattttaatttcttgagtccattattaagactccatgcatagtttaaattgacttgctcaaaatatatatggttgatat |
221 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7195891 |
tatgatttggtatatgtgcaccattttaatttcttgagtccattattaagacttcatgcatagtttaaattgacttgctcaaaatatatatggttgatat |
7195792 |
T |
|
| Q |
222 |
ttaaacatgcatatatatta |
241 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7195791 |
ttaaacatgcatatatatta |
7195772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University