View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_76 (Length: 249)
Name: NF20116_low_76
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33483420 - 33483660
Alignment:
| Q |
1 |
acaactcctccatatattcaggctgttggggactcctaatggagatgtgtggccaggtgttagtaaactaatgaactggcatgagtaccctcagtggggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33483420 |
acaactcctccatatattcaggctgttggggactcctaatgaagatgtgtggccaggtgttagtaaactaatgaactggcatgagtaccctcagtggggt |
33483519 |
T |
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| Q |
101 |
cctcaaagtctttcaaaggctgttcccggtttggaagagactggagtggatttactctctgtaagttagcccccttgattacttaacattttctattaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33483520 |
cctcaaagtctttcaaaggctgttcccggtttggaagagactggagtggatttactctctgtaagttagcccccttgattacttaacattttctattaac |
33483619 |
T |
|
| Q |
201 |
tggtgtcccttttctattttaataatgttgtttttcttctc |
241 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
33483620 |
tggtgtcctttttctattttaataatgttgtttttcttctc |
33483660 |
T |
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