View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_79 (Length: 236)
Name: NF20116_low_79
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 55695280 - 55695107
Alignment:
| Q |
54 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgaccttttcaggttccgcgttctctacctctggcttggct |
153 |
Q |
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| T |
55695280 |
tgctgattctgtttcagtagtttctttagcctcttcagctgatacttcctctttcacttcgactttttcaggttccgggttctctacctctggcttggct |
55695181 |
T |
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| Q |
154 |
tcctcagttacttgtgtactctcagcttcaactggaacttcagtttctcctttctccactgctactacttcttc |
227 |
Q |
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| T |
55695180 |
tcctgggttacttgtgtactctcagcttcaacgggaacttcagtttcttcattctccactgctactacttcttc |
55695107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 55695405 - 55695284
Alignment:
| Q |
1 |
atcactttttatgcttctgtggtggttacttcttccactggtactgctatggctgctgattctgtttcagtagtttctttagcctcttcagctgatactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
55695405 |
atcactttttatgcttctgtggtggttacttcttccactggtgctgctattgctgctgattctatttcagtagtttctttagcctcttcagttgatactt |
55695306 |
T |
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| Q |
101 |
cctctttcacttcgaccttttc |
122 |
Q |
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| T |
55695305 |
cctcttttgcttcgactttttc |
55695284 |
T |
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