View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_84 (Length: 225)
Name: NF20116_low_84
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_84 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 14716006 - 14715776
Alignment:
| Q |
8 |
tcaacatttaaccaacaaataaaactcaaattca-----------tctcttcaacatcatgaattcatgtctttcacataaaatgtacaattgtcaaaat |
96 |
Q |
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| T |
14716006 |
tcaacatttaaccaacaaataaaactcaaattcaacatcaattcatctcttcaacatcatgaattcatggctttcacataaaatgtacaattgtcaaaat |
14715907 |
T |
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| Q |
97 |
tgtgacnnnnnnnnataatacacaagagggatnnnnnnngatcacgttagttaactacaactatgaaaaggtaaaatc---taaaaaagaaattaaagaa |
193 |
Q |
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| T |
14715906 |
tgtgacttttttttataatacacaagagggataaaaaa-gatcacgttagttaactacaactatgaaaaggtaaaatctattaaaaaaaaaattaaagaa |
14715808 |
T |
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| Q |
194 |
gaaggatgacaacactctctttttaacattct |
225 |
Q |
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||||| | |||||||||||||||||||||||| |
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| T |
14715807 |
gaaggctaacaacactctctttttaacattct |
14715776 |
T |
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