View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20116_low_9 (Length: 506)
Name: NF20116_low_9
Description: NF20116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20116_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 12118864 - 12118547
Alignment:
| Q |
1 |
tattattgtaagttttactgtttccgtatgcttgcattgatttcattagcttcttgtacatcaagagcattaaggttataggtgagtgatatcaaaaaca |
100 |
Q |
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| T |
12118864 |
tatttttgtaagttttactgtttccgtatgcttgcattgatttcattagcttcttgtacatcaagagcattaaggttataggtgagtgatatcaaaaaca |
12118765 |
T |
|
| Q |
101 |
cggtaggtcttgtgttgattgaaaatttaacccatgttttaccgaataagtgcactctatttttgttgtccttgatgtcttaatggtttaccggttagac |
200 |
Q |
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| T |
12118764 |
cagtagatcttgtgttgattgaaaatttaacccatgttttaccggataagtgcactctatttttgttgtccttgatgtcttaatggtttaccggttagac |
12118665 |
T |
|
| Q |
201 |
atgaatgatgcaaaatatgattaatacaatttgatgtctgtattttgttttttctatttatgatgacttcttattccttaaggttgggacgcctggacga |
300 |
Q |
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| T |
12118664 |
atgaatgatgcaaaatatgattaatacaatttgatgtctgtattttgttttttctatttatgatgacttcttattcctgaaggttgggacgcctggacga |
12118565 |
T |
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| Q |
301 |
gtcttggatcacctaaaa |
318 |
Q |
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| T |
12118564 |
gtcttggatcacctaaaa |
12118547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 314 - 491
Target Start/End: Complemental strand, 12112585 - 12112407
Alignment:
| Q |
314 |
taaaagaccaaaataaacttttgaaataagttaaaaggatcgaatttgtttgaagcctaatatattttaataacattgaagattacaaacaatttttatg |
413 |
Q |
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| T |
12112585 |
taaaagactaaaataaacttttgaaataagttaaaaggatcaaatttgttttaagcctaatatattttaataacattgaagattacaaccaatttttatg |
12112486 |
T |
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| Q |
414 |
taaattaccatcccctctctttagagatgca-aaaatcactctcactctttcctcttatgtcaaaatatacactcttct |
491 |
Q |
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| T |
12112485 |
taaattaccatcccctctcttaagagatgcaaaaaatcactaccactctttcctcttatgtcaaaatatatactcttct |
12112407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 11924680 - 11924718
Alignment:
| Q |
280 |
aaggttgggacgcctggacgagtcttggatcacctaaaa |
318 |
Q |
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| T |
11924680 |
aaggttgggacgcctggacgactcttggatcacctaaaa |
11924718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 30645178 - 30645218
Alignment:
| Q |
278 |
ttaaggttgggacgcctggacgagtcttggatcacctaaaa |
318 |
Q |
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| T |
30645178 |
ttaaggttgggactcctggacgtgtcttggatcacctaaaa |
30645218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 20523247 - 20523209
Alignment:
| Q |
280 |
aaggttgggacgcctggacgagtcttggatcacctaaaa |
318 |
Q |
| |
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| T |
20523247 |
aaggttgggactcctggacgtgtcttggatcacctaaaa |
20523209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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