View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_high_1 (Length: 631)
Name: NF20117_high_1
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 40082381 - 40082727
Alignment:
| Q |
10 |
gaatagtaatatcctacataactagtggagtgaccacataatattatttgaggactgcaaagaaaagaaaaaagggatgatgattttttcatgacatgtt |
109 |
Q |
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| T |
40082381 |
gaatagtaatatcctacataactagtggagtgacgacataatattatttgaggactgcaaagaaaagaaaaaagggatgatgattttttcatgacatgtt |
40082480 |
T |
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| Q |
110 |
aatttattggagttccaacatataaaatgaactttgttttattaaattcaaaaaatgaactttgttgtaannnnnnnnnnnnctatgtatggttttgaaa |
209 |
Q |
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| T |
40082481 |
aatttattggagttccaacatataaaatgaactttgttttattaaattcaaaaaatgaactttgttgtaatttttgttttttctatgtatggttttgaaa |
40082580 |
T |
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| Q |
210 |
ctaaaaatgaaagcataaatttcaaataatgtgaaagaaacatttaccagattgtttgagcattattgttgtattatagggatgtaagctcaagaaccaa |
309 |
Q |
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| T |
40082581 |
ctaaaaatgaaagcataaatttcaaataatgtgaaagaaacatttaccagattgtttgagcattattgttgtattatagggatgtaagctcaagaaccaa |
40082680 |
T |
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| Q |
310 |
tcgagcacttatgagccatagatcctcatttaatggattatgacctt |
356 |
Q |
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| T |
40082681 |
tcgagcacttatgagccatagatcctcatttcatggattatgacctt |
40082727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 512 - 617
Target Start/End: Original strand, 40082813 - 40082918
Alignment:
| Q |
512 |
tcagtctttatctataaattcatttgacacannnnnnnaatagatactttgaggagtaaaagattagtattgcattttcattgttcaaagacaaagaggt |
611 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40082813 |
tcagtctttatctataaattcatttgacacatttttttaatagatactttgaggagtaaaagattagtattgcattttcattgttcaaagacaaagaggt |
40082912 |
T |
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| Q |
612 |
aaaaag |
617 |
Q |
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|||||| |
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| T |
40082913 |
aaaaag |
40082918 |
T |
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