View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_high_3 (Length: 393)
Name: NF20117_high_3
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 25892944 - 25892589
Alignment:
| Q |
19 |
actcttgattatgtacactacataccctggactcataattgtgatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaata |
118 |
Q |
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| T |
25892944 |
actcttgattatgtacactacataccctggactcataattgtgatatatttttctggagcaaataggattattgtattgaagaggattctcactaaaata |
25892845 |
T |
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| Q |
119 |
tgaagatggaagcaactaagtgaatggaaattttcagccatgccatttatttcttgatgactttttgaggaaagtcactcaacgagcactgttgtt--tt |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25892844 |
tgaagatggaagcaactatgtgaatggaaattttcagccatgccatttatttcttgatgactttttgaggaaagtcactcaacgagcactgttgtttttt |
25892745 |
T |
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| Q |
217 |
ttatatatacaatttacttttcctatgttgcaatttaaataaggaaaaggtataacttttcataatcagtttttccatttatgctatagtactttcattt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25892744 |
ttatatatacaatttacttttcctatgttgcaatttaaataaggaaaaggtattacttttcataatcagtttttccatttatgttatagtactttcattt |
25892645 |
T |
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| Q |
317 |
tcatgttgcccactctttaagtatgagaaaatatataaacattttgagtaagctca |
372 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892644 |
tcatgttgcccattctttaagtatgagaaaatatataaacattttgagtaagctca |
25892589 |
T |
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