View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20117_high_5 (Length: 295)
Name: NF20117_high_5
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 289
Target Start/End: Original strand, 23430615 - 23430885
Alignment:
| Q |
22 |
tccactcgtagaagcatgcacggggtcttcaatgttgttagtgaaggtgcagataggattggtgaaactgcaaaagatgttggaaatatcgcaaatcaag |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23430615 |
tccactcgtagaagcatgcaaggggtcttcaatgttgttagtgaaggtgcagataggattggtgaaactgcaaaagatgttggaaatatcgcgaatcaag |
23430714 |
T |
|
| Q |
122 |
gacaagatgttgtagatgctgctgagaaaatttctcatgccatctcgtcttacattccttccagttatattataatagttatactagttaatgtacttta |
221 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23430715 |
gacaagatgttgtagatgccgctgagaaaatttctcatgccatctcgtcttacattccttccagttatattataatagttatactagttaatgtacttta |
23430814 |
T |
|
| Q |
222 |
tgtat---taggataatttgatttgttgatgtgggtctagtggaaatgaagatgcaatgttaagtgttcat |
289 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23430815 |
tgtatgaggaggataatttgatttgttgatgtgggtctagtggaaatgaagatgcaatgttaagtgttcat |
23430885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 23438789 - 23438901
Alignment:
| Q |
123 |
acaagatgttgtagatgctgctgagaaaatttctcatgccatctcgtcttacattccttccagttatattataatagttatactagttaatgtactttat |
222 |
Q |
| |
|
||||||||| ||||||| ||||| |||| |||| ||||||| ||| | |||||||||||||||||||||||||| ||||||||| ||| ||||| ||||| |
|
|
| T |
23438789 |
acaagatgtcgtagatgttgctgggaaagtttcccatgccacctctttttacattccttccagttatattataacagttatactggtttatgtagtttat |
23438888 |
T |
|
| Q |
223 |
gtattaggataat |
235 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
23438889 |
gtataaggataat |
23438901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 23445571 - 23445637
Alignment:
| Q |
182 |
ccagttatattataatagttatactagttaatgtactttatgtattaggataatttgatttgttgat |
248 |
Q |
| |
|
||||||||||||||| ||||||| | ||| |||||||||||| || || ||||||| |||||||||| |
|
|
| T |
23445571 |
ccagttatattataacagttataatggtttatgtactttatgcatgagaataattttatttgttgat |
23445637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University