View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_high_6 (Length: 283)
Name: NF20117_high_6
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 2115030 - 2114770
Alignment:
| Q |
12 |
tcatcaagtgcaatgagttttgtctagaggctaatgatggtaatttaagaagttgcatatcgaaagtttcgagtattttaagagcaagacttggtaggaa |
111 |
Q |
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| T |
2115030 |
tcatcaagtgcaatgagttttgtctagaggctaatgatggtaatttaagaagttgcatatcgaaagtttcgagtattttaagagcaagacttggtaggaa |
2114931 |
T |
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| Q |
112 |
gaatgctggtcataaggataatcataatatgctaggatttgagtattcattaccttttccaaggaacgcatattttgttggaagagagaaagagattatg |
211 |
Q |
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| T |
2114930 |
gaatgttggtcataaggataatcataatatgctaggatttgagaattcattaccttttccgaggaatgcatattttgttggaagagagaaagagattatg |
2114831 |
T |
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| Q |
212 |
gaaattgaaggtttactttttggaagtaggaattgttgtgtggaacaacaagttcaagatc |
272 |
Q |
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| T |
2114830 |
gaaattgaaggtttactttttggaagtaggaattgttgtgtggaacaacaagttcaagatc |
2114770 |
T |
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