View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20117_low_1 (Length: 784)
Name: NF20117_low_1
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 642; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 19 - 748
Target Start/End: Complemental strand, 39396660 - 39395933
Alignment:
| Q |
19 |
catgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396660 |
catgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtca |
39396561 |
T |
|
| Q |
119 |
aggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
39396560 |
aggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtca |
39396461 |
T |
|
| Q |
219 |
aatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataagtactccatgcccttatatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39396460 |
aatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtactccatgcc-ttatatt |
39396362 |
T |
|
| Q |
319 |
tgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatcataatctatttttcc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39396361 |
tgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatcataatctatttttcc |
39396262 |
T |
|
| Q |
419 |
tcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaatt |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396261 |
tcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaatt |
39396162 |
T |
|
| Q |
519 |
atacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaac |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39396161 |
atacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaat |
39396062 |
T |
|
| Q |
619 |
tatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacaatattacagtctaattgtatttagtca |
718 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39396061 |
tatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacagtattacagtctaattgtatttagtca |
39395963 |
T |
|
| Q |
719 |
ctgtgtaatttgcattacgtttgtagatgt |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39395962 |
ctgtgtaatttgcattacgtttgtagatgt |
39395933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
239 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
298 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 43598201 - 43598128
Alignment:
| Q |
19 |
catgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
92 |
Q |
| |
|
||||||||||||||||||||||| || |||| | |||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
43598201 |
catgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
284 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
358 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
|
|
| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University