View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20117_low_10 (Length: 274)
Name: NF20117_low_10
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_10 |
 | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0224 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 14014 - 13767
Alignment:
| Q |
10 |
tgcagtaacaaaggactagacatgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccag |
109 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14014 |
tgcagtacccaaggactagacatgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccag |
13915 |
T |
|
| Q |
110 |
aagccaaagccacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcact |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13914 |
aagacaaagccacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcact |
13815 |
T |
|
| Q |
210 |
aactacattcacacatgccataacagatgaaccatcttcatcctcaca |
257 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
13814 |
aacttcattcacacatgccataacagatgaaccaccttcatcttcaca |
13767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 42932757 - 42933004
Alignment:
| Q |
10 |
tgcagtaacaaaggactagacatgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccag |
109 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42932757 |
tgcagtacccaaggactagacatgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccag |
42932856 |
T |
|
| Q |
110 |
aagccaaagccacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcact |
209 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42932857 |
aagacaaagccacttcacatacaacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcact |
42932956 |
T |
|
| Q |
210 |
aactacattcacacatgccataacagatgaaccatcttcatcctcaca |
257 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42932957 |
aacttcattcacacatgccataacagatgaaccaccttcatcttcaca |
42933004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University