View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_low_11 (Length: 273)
Name: NF20117_low_11
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3207418 - 3207679
Alignment:
| Q |
1 |
tatgttaccttttgcttcatctcagtgaatgttatttgtgatggccttacactcatacctactgccaaaggaacatcaattaccacattgtaagttgtgt |
100 |
Q |
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| T |
3207418 |
tatgttaccttttgcttcatctcagtgaatgttatttgtgatggccttacactcatacctactgccaaaggaacatcaattaccacattgtaagttgtgt |
3207517 |
T |
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| Q |
101 |
tgacaggtccaacatttgtcaatgttctactataaaactgtgaagtattccccaaccgaatcgaaatcgatggataattaagctgtgcttgtggtatgct |
200 |
Q |
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| T |
3207518 |
tgacaggtccaacatttgtcaatgttctactataaaactgtgaagtattccccaaccgaatcgaaatcgatggataattaagctgtgcttgtggtatgct |
3207617 |
T |
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| Q |
201 |
ctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataat |
262 |
Q |
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| T |
3207618 |
ctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataat |
3207679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3201444 - 3201705
Alignment:
| Q |
1 |
tatgttaccttttgcttcatctcagtgaatgttatttgtgatggccttacactcatacctactgccaaaggaacatcaattaccacattgtaagttgtgt |
100 |
Q |
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||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
3201444 |
tatgttaccttttgcttcacctcggtgaatgttatttgagatggccttacactcatacgtactgccacaggcacatcaattaccacattgtaagttgtgt |
3201543 |
T |
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| Q |
101 |
tgacaggtccaacatttgtcaatgttctactataaaactgtgaagtattccccaaccgaatcgaaatcgatggataattaagctgtgcttgtggtatgct |
200 |
Q |
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| T |
3201544 |
taaccggtccaacatttgtcaacgttctactataaaactgtgaagtattccccaaccgaatagaaattgatgggtaattaagttgtgcttgtggtatgct |
3201643 |
T |
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| Q |
201 |
ctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataat |
262 |
Q |
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| T |
3201644 |
ctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtataat |
3201705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3215354 - 3215615
Alignment:
| Q |
1 |
tatgttaccttttgcttcatctcagtgaatgttatttgtgatggccttacactcatacctactgccaaaggaacatcaattaccacattgtaagttgtgt |
100 |
Q |
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||||| || ||||||||| ||||||||||||||||||| | ||| ||| ||| ||| | || |||||||||||||||||| ||||||||||||| ||| |
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| T |
3215354 |
tatgtaactttttgcttcttctcagtgaatgttatttgagcaggctttatactgatatccacagccaaaggaacatcaatttccacattgtaagtcatgt |
3215453 |
T |
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| Q |
101 |
tgacaggtccaacatttgtcaatgttctactataaaactgtgaagtattccccaaccgaatcgaaatcgatggataattaagctgtgcttgtggtatgct |
200 |
Q |
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||| |||||||||||| |||| |||||| |||||||||| |||||| ||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
3215454 |
tgataggtccaacattcgtcaccgttctagtataaaactgagaagtagaccccaacaatatagaaaatgatggataattaagctgtgcttgtggtatgct |
3215553 |
T |
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| Q |
201 |
ctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataat |
262 |
Q |
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||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||| |
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| T |
3215554 |
ctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaat |
3215615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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