View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_low_13 (Length: 265)
Name: NF20117_low_13
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 2488910 - 2489163
Alignment:
| Q |
11 |
ttatactcaaattcgtatgtatgttaggattcttgtaggagacctctcctttttattttaatttataatatatatttgccattatnnnnnnnnctaggac |
110 |
Q |
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| T |
2488910 |
ttatactcaaatttgcatgtatgtttggactcttgtaggagacctctcctttttattttaatttataatatatatttgccattataaaaaaaactaggac |
2489009 |
T |
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| Q |
111 |
gattgagtttcaaagttaatccttattgtaagtctaattgaacnnnnnnnctacaaacagaaagtagttataaattaatattttaaaagagggagttctg |
210 |
Q |
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| T |
2489010 |
gattgagtttcaaagttagtccttattgtaagtctaattgaacaaaaaaactacaaacagaaagtagttataaattaatattttaaaagagggagttctg |
2489109 |
T |
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| Q |
211 |
aaatccttattgtaagttgtaacccttcatctcttaatattacaaaatacaaaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489110 |
aaatccttattgtaagttgtaacccttcatctcttaatattacaaaatacaaaa |
2489163 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 1010300 - 1010247
Alignment:
| Q |
41 |
tcttgtaggagacctctcctttttat-tttaatttataatatatatttgccatt |
93 |
Q |
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| T |
1010300 |
tcttgtaggagatttctcctttttatatttaatatataatatatatttgccatt |
1010247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 10348257 - 10348206
Alignment:
| Q |
41 |
tcttgtaggagacctctcctttttattttaatttataatatatatttgccatt |
93 |
Q |
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| T |
10348257 |
tcttgtaggagacctctccttttt-gtttaagttataatatttatttgccatt |
10348206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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