View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_low_15 (Length: 236)
Name: NF20117_low_15
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 23430351 - 23430468
Alignment:
| Q |
16 |
ctaacaaactttgacaccagacaatcctggttgg--cattcatttttcatctatatataaagcgagaatcatacattaattaaatccatttttcttctac |
113 |
Q |
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| T |
23430351 |
ctaacaaactttgacaccagacaatcctggttggggcattcatttttcatctatatataaaacgagaatcatacattaattaaatcca-ttttcttctac |
23430449 |
T |
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| Q |
114 |
aataaagcttattattact |
132 |
Q |
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| T |
23430450 |
aataaagcttattattact |
23430468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 23430456 - 23430542
Alignment:
| Q |
150 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttgatactcttcctacc |
236 |
Q |
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| T |
23430456 |
gcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcctacc |
23430542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 23438401 - 23438525
Alignment:
| Q |
16 |
ctaacaaactttgacaccagacaatcctggttggc----attcatttttcatctatatataaagcgagaatcatacattaattaa----atccatttttc |
107 |
Q |
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| T |
23438401 |
ctaacaaactttgacagcagagaatcatggttggcgtccattcatttttcttctatatataaagcaagaattagacattcattactcacatccatttttc |
23438500 |
T |
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| Q |
108 |
ttctacaataaagcttattattact |
132 |
Q |
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||| | ||||||||||||| ||||| |
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| T |
23438501 |
ttcaataataaagcttatttttact |
23438525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 23438513 - 23438587
Alignment:
| Q |
150 |
gcttattattactttctcttgcatac-aaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagttga |
223 |
Q |
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||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||| || ||||||||||||||||| |
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| T |
23438513 |
gcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctcctagttga |
23438587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 23445250 - 23445320
Alignment:
| Q |
151 |
cttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgttgctcatgctcctagtt |
221 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||| | ||||||||| |
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| T |
23445250 |
cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcctcctcctagtt |
23445320 |
T |
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