View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20117_low_3 (Length: 426)

Name: NF20117_low_3
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20117_low_3
NF20117_low_3
[»] chr3 (1 HSPs)
chr3 (19-415)||(7926379-7926775)
[»] chr4 (5 HSPs)
chr4 (118-186)||(13311716-13311784)
chr4 (295-327)||(12908322-12908354)
chr4 (119-187)||(12908475-12908543)
chr4 (92-187)||(13309821-13309917)
chr4 (199-275)||(48073886-48073962)
[»] chr2 (3 HSPs)
chr2 (131-188)||(37557275-37557332)
chr2 (136-188)||(43127029-43127081)
chr2 (118-171)||(37539173-37539226)
[»] chr8 (2 HSPs)
chr8 (128-188)||(29136862-29136922)
chr8 (219-274)||(29136770-29136825)
[»] chr7 (2 HSPs)
chr7 (128-186)||(10454517-10454575)
chr7 (219-275)||(46648871-46648927)
[»] chr1 (1 HSPs)
chr1 (119-188)||(43111518-43111587)


Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 7926775 - 7926379
Alignment:
Q  19 taacacgatttaaatatgtggttattatgttcagtaaatggttaatgaatataaaaggtggcgaaactctttaaccaccaacataatttcactaaaaacg 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7926775 taacacgatttaaatatgtggttattacgttcagtaaatggttaatgaatataaaaggtgtcgaaactctttaaccaccaacataatttcactaaaaacg 7926676  T
Q  119 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatgttttgtcgtcaatgagttccgacatctgct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926675 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatgttttgtcgtcaatgagttccgacatctgct 7926576  T
Q  219 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatggaaaacttgtcaaattttagttgtttaaata 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7926575 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaaccacttacgttaatggaaaacttgtcaaattttagttgttcaaata 7926476  T
Q  319 acacaactgttccgaaatttctactagatatgccggggtgtccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttctt 415  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7926475 acacaactgttccgaaatttctactagatatgccgggttgtccttatcctctaactgaaaatgtatttatgaggataatagtaccttcatgtttctt 7926379  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 13311784 - 13311716
Alignment:
Q  118 gaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaatta 186  Q
    ||||||||| |||||| | ||| ||||| |||| ||||| |||| ||||||||||||||||||||||||    
T  13311784 gaatttgaatgtgattaaacactattttaaggtgttcaattctatatgtagttgaacacctgaaaatta 13311716  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 12908354 - 12908322
Alignment:
Q  295 tgtcaaattttagttgtttaaataacacaactg 327  Q
    |||||||||||||||||| ||||||||||||||    
T  12908354 tgtcaaattttagttgttcaaataacacaactg 12908322  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 12908475 - 12908543
Alignment:
Q  119 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattat 187  Q
    ||||| || |||||| | ||| ||||| |||| ||||| |||| |||||||||||||||||||| ||||    
T  12908475 aatttaaatgtgattaaacactattttaaggtgttcaattctacatgtagttgaacacctgaaagttat 12908543  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 13309917 - 13309821
Alignment:
Q  92 accaccaacataatttcactaaaaacgaatttgaacgtgattgaccacaattt-tcaggtattcaactctaaatgtagttgaacacctgaaaattat 187  Q
    ||||||||||||| |||| |||  | ||||||||| |||| | | ||| |||| | |||  ||||| |||| |||||||||||||||||||||||||    
T  13309917 accaccaacataaattcattaaccatgaatttgaatgtgactaaacactatttgtaaggggttcaattctacatgtagttgaacacctgaaaattat 13309821  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 48073962 - 48073886
Alignment:
Q  199 aatgagttccgacatctgctatatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacca 275  Q
    |||||||| ||||||||| |  | |||||  |||||||||| |||||| ||||| |||||||||  |||||||||||    
T  48073962 aatgagtttcgacatctggttgacccattgaccatctactaaacgtaattaaccgcatatttgagatgtgttaacca 48073886  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 37557275 - 37557332
Alignment:
Q  131 attgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 188  Q
    ||||||||||||||||||||  |||| | || | ||||||||||||||||||||||||    
T  37557275 attgaccacaattttcaggtgatcaaatatacacgtagttgaacacctgaaaattatg 37557332  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 43127081 - 43127029
Alignment:
Q  136 ccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 188  Q
    ||||||||||||||||||| | |||||||| |||||| ||||| |||||||||    
T  43127081 ccacaattttcaggtattctaatctaaatgaagttgagcaccttaaaattatg 43127029  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 37539226 - 37539173
Alignment:
Q  118 gaatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttg 171  Q
    |||| ||||||||||| ||||||||||||| || ||||| |||| |||||||||    
T  37539226 gaatctgaacgtgattaaccacaattttcaagtgttcaaatctacatgtagttg 37539173  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 29136862 - 29136922
Alignment:
Q  128 gtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 188  Q
    |||||| ||||||||||  |||| ||||| |||| ||||||||||||| ||||||||||||    
T  29136862 gtgattaaccacaatttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatg 29136922  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 29136825 - 29136770
Alignment:
Q  219 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacc 274  Q
    |||| |||||||||| ||||  |||||| ||||||| |||||||||||||||||||    
T  29136825 atattcattagccatatactgaacgtaattaaccacttatttgaattgtgttaacc 29136770  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 10454575 - 10454517
Alignment:
Q  128 gtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaatta 186  Q
    |||||| ||||||||  ||| | |||||| |||||||||| ||||||||||||||||||    
T  10454575 gtgattaaccacaatagtcaagcattcaaatctaaatgtaattgaacacctgaaaatta 10454517  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 46648871 - 46648927
Alignment:
Q  219 atatccattagccatctactatacgtaaataaccacatatttgaattgtgttaacca 275  Q
    |||| ||||| ||||| | || |||||| |||||| |||||||||||||||||||||    
T  46648871 atattcattaaccatcaattaaacgtaattaaccatatatttgaattgtgttaacca 46648927  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 43111518 - 43111587
Alignment:
Q  119 aatttgaacgtgattgaccacaattttcaggtattcaactctaaatgtagttgaacacctgaaaattatg 188  Q
    |||||||| |||||| || |||||||| |||| ||  |||||| ||||||  ||||||||||||||||||    
T  43111518 aatttgaatgtgattaactacaattttgaggtgtttgactctacatgtaggagaacacctgaaaattatg 43111587  T

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