View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20117_low_5 (Length: 367)

Name: NF20117_low_5
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20117_low_5
NF20117_low_5
[»] chr3 (13 HSPs)
chr3 (17-358)||(10891701-10892042)
chr3 (52-358)||(8863716-8864022)
chr3 (52-358)||(11157353-11157659)
chr3 (19-358)||(11146187-11146526)
chr3 (19-358)||(11128362-11128701)
chr3 (129-183)||(13173532-13173586)
chr3 (129-183)||(13335408-13335462)
chr3 (129-183)||(13346605-13346659)
chr3 (216-246)||(11243973-11244003)
chr3 (128-162)||(11244055-11244089)
chr3 (129-183)||(13163484-13163538)
chr3 (61-154)||(13397916-13398009)
chr3 (203-255)||(12130839-12130891)
[»] scaffold0002 (2 HSPs)
scaffold0002 (129-183)||(133402-133456)
scaffold0002 (129-183)||(143450-143504)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 10891701 - 10892042
Alignment:
Q  17 actacacatctcttttggagttgaaattaaatggtagctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10891701 actacacatctcttttggagttgaaattaaatggtagctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattga 10891800  T
Q  117 aggttgtagcggtctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttata 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10891801 aggttgtagcggtctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttata 10891900  T
Q  217 tcactacctcaacggatggacaccctcacctctcttgaatgtttgagtctccaccagcttccaaaactagagtttgcaccatgcgaaggagttttcttac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10891901 tcactacctcaacggatggacaccctcacctctcttgaatgtttgagtctccatcagcttccaaaactagagtttgcaccatgcgaaggagttttcttac 10892000  T
Q  317 ctcccaaattacaaaccatttccattaaatctgtgagaataa 358  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  10892001 ctcccaaattacaaaccatttctattaaatctgtgagaataa 10892042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 52 - 358
Target Start/End: Original strand, 8863716 - 8864022
Alignment:
Q  52 agctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattgaaggttgtagcggtctggaatccatttttatttcag 151  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||  |||||| |||||||  |||||||||||||||||||||||||    
T  8863716 agctgtggctcactttcctccttcccattgaatggttttcctaagctccaagagcttgtcattgatggttgtactggtctggaatccatttttatttcag 8863815  T
Q  152 aaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttatatcactacctcaacggatggacaccctcacctctct 251  Q
    ||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8863816 aaagttcttccgatcacccctcaaccctccaaagccttagtgtatattcctgcaaggcccttatatcactacctcaacggatggacaccctcaccactct 8863915  T
Q  252 tgaatgtttgagtctccaccagcttccaaaactagagtttgcaccatgcgaaggagttttcttacctcccaaattacaaaccatttccattaaatctgtg 351  Q
    |||| | |||  | || |||| ||||||||||| |||||||||| ||  |||||||||||||||||||||||||| ||||| ||||  |||| ||||||     
T  8863916 tgaaagattgcatttctaccatcttccaaaacttgagtttgcactatatgaaggagttttcttacctcccaaattgcaaacaatttatattacatctgta 8864015  T
Q  352 agaataa 358  Q
    |||||||    
T  8864016 agaataa 8864022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 52 - 358
Target Start/End: Complemental strand, 11157659 - 11157353
Alignment:
Q  52 agctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattgaaggttgtagcggtctggaatccatttttatttcag 151  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||  |||| ||||||| |||||||  |||||||||||||||||||||||||    
T  11157659 agctgtggctcactttcctccttcccattggatggttttcctaagctccaagagctttacattgatggttgtactggtctggaatccatttttatttcag 11157560  T
Q  152 aaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttatatcactacctcaacggatggacaccctcacctctct 251  Q
    ||| ||||||| ||||| |||||||||||||| | |||   |||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11157559 aaagttcttcctatcactcctcaaccctccaagaacttaacgtacgttcctgtaaggcccttatatcactacctcaacggatggacaccctcaccgctct 11157460  T
Q  252 tgaatgtttgagtctccaccagcttccaaaactagagtttgcaccatgcgaaggagttttcttacctcccaaattacaaaccatttccattaaatctgtg 351  Q
    |||| | |||  ||||||||| |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  11157459 tgaaagattgtatctccaccatcttccaaaactagagtttgcactatatgaaggagttttcttacctcccaaattacaaacaatttctattacatctgtg 11157360  T
Q  352 agaataa 358  Q
    |||||||    
T  11157359 agaataa 11157353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 11146526 - 11146187
Alignment:
Q  19 tacacatctcttttggagttgaaattaaatggtagctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattgaag 118  Q
    |||||||| |||||||||||||  |||    | |||||||||||||||||||||||||||||  ||||||||||||||||||||  ||||  |||||| |    
T  11146526 tacacatcgcttttggagttgagtttactcagcagctgtggctcactttcctccttcccattggatggttttcctaagctccaaaagcttgtcattgatg 11146427  T
Q  119 gttgtagcggtctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttatatc 218  Q
    ||||||  |||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| | |||   |||  |||||||||||||||||||||    
T  11146426 gttgtactggtctggaatccatttttatttcagaaagttcttcctatcactcctcaaccctccaagaacttcacgtaagttcctgtaaggcccttatatc 11146327  T
Q  219 actacctcaacggatggacaccctcacctctcttgaatgtttgagtctccaccagcttccaaaactagagtttgcaccatgcgaaggagttttcttacct 318  Q
    |||||||||||| ||||||||||||||  |||||||| |||||||||||| ||| |||||||||||||||||  ||| ||| ||||||||||||||||||    
T  11146326 actacctcaacgaatggacaccctcacaactcttgaaagtttgagtctccgccatcttccaaaactagagttgtcactatgtgaaggagttttcttacct 11146227  T
Q  319 cccaaattacaaaccatttccattaaatctgtgagaataa 358  Q
    |||||||||||||| ||||| |||  ||||||||||||||    
T  11146226 cccaaattacaaacaatttctattgcatctgtgagaataa 11146187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 19 - 358
Target Start/End: Complemental strand, 11128701 - 11128362
Alignment:
Q  19 tacacatctcttttggagttgaaattaaatggtagctgtggctcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattgaag 118  Q
    |||||||| |||||||||||||  ||||    |||||||   ||||||||||| || ||||| |||||||||||||||||||||  ||||  |||| |      
T  11128701 tacacatcgcttttggagttgactttaacaaatagctgtaattcactttcctcttttccattgaatggttttcctaagctccaagagcttttcattaatc 11128602  T
Q  119 gttgtagcggtctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaaaaccttggtgtatattcctgtaaggcccttatatc 218  Q
    ||||||   ||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||| |||  | || |||| || ||||||||||||||    
T  11128601 gttgtacttgtctggaatccatctttatttcagaaagttcttcccatcacccctcaaacctccaaaaacttattttaaattcatgcaaggcccttatatc 11128502  T
Q  219 actacctcaacggatggacaccctcacctctcttgaatgtttgagtctccaccagcttccaaaactagagtttgcaccatgcgaaggagttttcttacct 318  Q
    |||||||||||||||| ||||||||||| ||||||||  ||||  ||||||||| |||||||||||||||||  ||| ||| ||||||||||||||||||    
T  11128501 actacctcaacggatgaacaccctcaccactcttgaaattttgtatctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacct 11128402  T
Q  319 cccaaattacaaaccatttccattaaatctgtgagaataa 358  Q
    |||||||||||||| ||||| |||| ||||||||||||||    
T  11128401 cccaaattacaaacaatttctattacatctgtgagaataa 11128362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 13173532 - 13173586
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    |||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  13173532 tctggaatccatttttatttcagaaagttcttcccatctcccgtcaaccctccaa 13173586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 13335408 - 13335462
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    |||||||||||||||||||||| ||| ||||||| ||| ||| ||||||||||||    
T  13335408 tctggaatccatttttatttcaaaaaattcttcccatctcccgtcaaccctccaa 13335462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 13346605 - 13346659
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||    
T  13346605 tctggaatccatttttatttctgaaagttcttccgatctcccgtcaacgctccaa 13346659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 11244003 - 11243973
Alignment:
Q  216 atcactacctcaacggatggacaccctcacc 246  Q
    |||||||||||||||||||||||||||||||    
T  11244003 atcactacctcaacggatggacaccctcacc 11243973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 162
Target Start/End: Complemental strand, 11244089 - 11244055
Alignment:
Q  128 gtctggaatccatttttatttcagaaatttcttcc 162  Q
    ||||||||||||||||||||||||||| |||||||    
T  11244089 gtctggaatccatttttatttcagaaacttcttcc 11244055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 13163484 - 13163538
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    ||||||||||||||||||| || ||| ||||||| ||| ||| ||||||||||||    
T  13163484 tctggaatccatttttattacaaaaaattcttcccatctcccgtcaaccctccaa 13163538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 13397916 - 13398009
Alignment:
Q  61 tcactttcctccttcccattaaatggttttcctaagctccaactgcttcacattgaaggttgtagcggtctggaatccatttttatttcagaaa 154  Q
    |||||| ||||||| | | | ||||||||||||  ||||||| | |||  ||||||||| |||||| ||||  | |||||||||||||||||||    
T  13397916 tcacttacctcctttcaactgaatggttttcctgtgctccaaattctttccattgaaggctgtagcagtcttaagtccatttttatttcagaaa 13398009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 12130839 - 12130891
Alignment:
Q  203 gtaaggcccttatatcactacctcaacggatggacaccctcacctctcttgaa 255  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||  ||||||||    
T  12130839 gtaaggcgcttagatcactgcctcaacggatggacactctcacagctcttgaa 12130891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 133456 - 133402
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    |||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  133456 tctggaatccatttttatttcagaaagttcttcccatctcccgtcaaccctccaa 133402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 143504 - 143450
Alignment:
Q  129 tctggaatccatttttatttcagaaatttcttccgatcacccctcaaccctccaa 183  Q
    ||||||||||||||||||| || ||| ||||||| ||| ||| ||||||||||||    
T  143504 tctggaatccatttttattacaaaaaattcttcccatctcccgtcaaccctccaa 143450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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