View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20117_low_7 (Length: 294)
Name: NF20117_low_7
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3572839 - 3573123
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| || ||||||||| |
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| T |
3572839 |
ccaagttatcttaatgggtgctgttgagggttatcgtattgcaggtggacctctcggtgaggttgtcgacccactctacccaggtggtagttttgaccca |
3572938 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3572939 |
ttaggcctagctgatgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
3573038 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcctatgc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3573039 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttgctgacccagttaacaacaatgcatgggcctatgc |
3573123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 3576123 - 3576403
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
3576123 |
ccaagttatcttaatgggagctgttgagggttaccgtattgccggtggacctcttggtgaggtagtcgacccactctacccaggtggaagctttgaccca |
3576222 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||| || |||||||||||||| |||| |
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|
| T |
3576223 |
ttgggcctcgctgacgacccagaggcttttgcagagttaaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttc |
3576322 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcct |
281 |
Q |
| |
|
| || |||||||||||||| |||||| ||||||| ||||| ||||| | |||||||| || |||||||| || ||||||| |
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|
| T |
3576323 |
aggccattgtaaccggaaagggacctctagagaaccttgccgaccatatcactgaccccgtcaacaacaacgcttgggcct |
3576403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 3585095 - 3584815
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
3585095 |
ccaagttatcttaatgggagctgttgaaggttaccgtattgccggtggacctcttggtgaggtagtcgacccactctatccaggtggaagctttgaccca |
3584996 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| ||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||| |
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| T |
3584995 |
ttgggccttgctgaggaccccgaggcttttgcagagttaaaggttaaagaactcaagaatggtaggttagcgatgttctctatgtttggattctttgttc |
3584896 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcct |
281 |
Q |
| |
|
|||| || || |||||||| |||||| || | || |||||||||||| | ||||||||||||||||||| || ||||||| |
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|
| T |
3584895 |
aagccatcgtgaccggaaagggacctttaaaaaaccttgctgaccacatcgctgacccagttaacaacaacgcttgggcct |
3584815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3569792 - 3570076
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
3569792 |
ccaagttatcttaatgggcgccgtggagggttaccgtattgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgacccc |
3569891 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| ||||| || || || || ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |||| |
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|
| T |
3569892 |
ttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttc |
3569991 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcctatgc |
285 |
Q |
| |
|
| || ||||| |||||||| |||||||| ||||| || |||||||||||| |||| ||||||||||||||||| ||||||||||| |
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|
| T |
3569992 |
aggccattgtcaccggaaagggacctattgagaacctcgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgc |
3570076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 3577985 - 3578259
Alignment:
| Q |
7 |
tatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgacccattaggc |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| |
|
|
| T |
3577985 |
tatcttaatgggagctgttgagggttaccgtattgccgatggacctcttggtgaggtagtcgatccactctaccccggtggaagctttgacccattgggc |
3578084 |
T |
|
| Q |
107 |
ctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagcta |
206 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| || ||||| || | |
|
|
| T |
3578085 |
ctcgcagacgacccagaggcttttgcagagttaaaggttaaagaactcaagaatggcaggttagctatgttctcgatgtttggatttttcgttcaggcca |
3578184 |
T |
|
| Q |
207 |
ttgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcct |
281 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |||||||||||| | |||| ||||| |||| ||| || ||||||| |
|
|
| T |
3578185 |
ttgtaaccgaaaagggaccactagagaaccttgctgaccacatcgctgatccagtcaacagcaacgcttgggcct |
3578259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3564144 - 3564425
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || || |||||||| |||||||| ||||||||||| |
|
|
| T |
3564144 |
ccaagttatcttaatgggtgctgttgagggttaccgtattgctggtggacctctcggtgaggtggttgacccactctacccaggtggcagctttgacccc |
3564243 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| ||||| || || || || ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||| || |||| |
|
|
| T |
3564244 |
ttgggccttgccgaagatcccgaggcttttgcagagttgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggatttttcgttc |
3564343 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggccta |
282 |
Q |
| |
|
|||| ||||| || ||||| |||||||| ||||| || || ||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
3564344 |
aagccattgtgactggaaagggacctatcgagaacctcgccgaccaccttgctgacccggttaacaacaatgcttgggccta |
3564425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 13276070 - 13276355
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | || |||||||| |||||||| ||||| |||||| |
|
|
| T |
13276070 |
ccaagttatcttgatgggtgctgttgagggttaccgtattgctggtggacctcttggtgaggtgattgacccactctacccaggtggtagcttcgaccca |
13276169 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| || || || || |||||||| ||||||| |||||| || |||||||| | || ||||| |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
13276170 |
ttgggtctcgccgatgacccagaagcttttgtagagttgaaagtgaaagagattaagaatggtaggttagccatgttttctatgtttggattcttcgttc |
13276269 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcctatgct |
286 |
Q |
| |
|
|||| ||||| |||||||| |||||| | || || |||||||||||||| | ||||| || |||||||| || ||||||| |||| |
|
|
| T |
13276270 |
aagccattgtgaccggaaagggacctttggaaaaccttgctgaccacctcgcagacccggtcaacaacaacgcttgggcctttgct |
13276355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38357159 - 38357443
Alignment:
| Q |
1 |
ccaagttatcttaatgggagctgtcgagggttaccgtattgccggtggacctcttggtgaggtagtcgatccactctatccaggtggaagctttgaccca |
100 |
Q |
| |
|
|||||||||||| ||||| ||||| || |||||||||||||| ||||| |||||||||||||| || || ||||| || ||||| || |||||||||||| |
|
|
| T |
38357159 |
ccaagttatcttgatgggcgctgttgaaggttaccgtattgctggtggtcctcttggtgaggttgttgacccactatacccaggaggcagctttgaccca |
38357258 |
T |
|
| Q |
101 |
ttaggcctagctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||| ||||| || |||||||| || || || ||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
38357259 |
ttgggcctagctgacgacccagaggctttcgcagagttgaaggttaaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttc |
38357358 |
T |
|
| Q |
201 |
aagctattgtaaccggaaaaggacctatagagaatcttgctgaccaccttactgacccagttaacaacaatgcatgggcctatgc |
285 |
Q |
| |
|
| |||||||| |||||||| |||||| | ||||| ||||| || || ||| | |||||||| |||||||| |||||||||||||| |
|
|
| T |
38357359 |
aggctattgtgaccggaaagggacctttggagaaccttgccgatcatcttgccgacccagtcaacaacaacgcatgggcctatgc |
38357443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 33992739 - 33992644
Alignment:
| Q |
143 |
gtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatctt |
238 |
Q |
| |
|
||||| ||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| || || ||||||||| | ||||||||| |
|
|
| T |
33992739 |
gtgaaggaaatcaaaaatggaagattggctatgttttcaatgtttggtttctttgttcaagctattgttactggtaaaggacctttggagaatctt |
33992644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 210
Target Start/End: Original strand, 42603065 - 42603165
Alignment:
| Q |
110 |
gctgacgacccagaggcttttgcagagttaaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattg |
209 |
Q |
| |
|
||||| ||||| || || || |||||||| ||||| || |||||||| || || | || |||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
42603065 |
gctgatgaccccgatgcattcgcagagttgaaggtcaaggaactcaagaacggccgattggctatgttctccatgtttggtttctttgttcaagccattg |
42603164 |
T |
|
| Q |
210 |
t |
210 |
Q |
| |
|
| |
|
|
| T |
42603165 |
t |
42603165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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