View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20117_low_8 (Length: 288)
Name: NF20117_low_8
Description: NF20117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20117_low_8 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 45781418 - 45781617
Alignment:
| Q |
31 |
aattgtttaacaaaaatgtagaattgatttggtttaccgcaaaagctttaaatattagagtctgataaacgtgtggttgctattcaaaaacaatttacct |
130 |
Q |
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| T |
45781418 |
aattgtttaataaaaatatagaattgatttggttcaccgcaaaagcttcaaatgttagagtctggtaaacgtgtggttgctattcagaaacaatttacct |
45781517 |
T |
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| Q |
131 |
tttttaaagctaaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttggaagcacctaccgtgcaaccaataaggcactcattga |
230 |
Q |
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| T |
45781518 |
ttttttaagtcaaacataaatattttgataaaattgtgtttgattgttgtaaacgtgagtttggaagcacctaccgtgcaatcaaacagacactcattga |
45781617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 14565115 - 14565288
Alignment:
| Q |
42 |
aaaaatgtagaattgatttggtttaccgcaaaagctttaaatattagagtctgataaacgtgtggttgctattcaaaaacaatttaccttttttaaagct |
141 |
Q |
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| T |
14565115 |
aaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtctggtaaacgtgcagttgctatccagaagcaatttaccttttttaaagcc |
14565214 |
T |
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| Q |
142 |
aaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttggaagcacctaccgtgcaaccaa |
215 |
Q |
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| T |
14565215 |
aaacataaatattttgatcaaattgcgtttgaatgttgtagacgtgagtttggaagcacccaccgtgcaaccaa |
14565288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 45782011 - 45782055
Alignment:
| Q |
228 |
tgagagtaatggaattttgttatgttcctataactataagttttt |
272 |
Q |
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| T |
45782011 |
tgagagtgatggaattttgttatgttcctataactgtaagttttt |
45782055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 441201 - 441415
Alignment:
| Q |
2 |
aatagacaaactgaaatattatataatataattgtttaacaaaaatgtagaattgatttggtttaccgcaaaagctttaaatattagagtctgataaacg |
101 |
Q |
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| T |
441201 |
aatagacaaactggaatattatataatataactgtttaacaaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtctggtaaacg |
441300 |
T |
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| Q |
102 |
tgtggttgctattcaaaaacaatttacc-ttttttaaagctaaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttggaagcac |
200 |
Q |
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| T |
441301 |
tgcagttgctatccagaagcaatttaccgttttttaaagccaaacaaaaatattttgatcaaattgcgtttgaatgttgtagatgtgagtttggaagcac |
441400 |
T |
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| Q |
201 |
ctaccgtgcaaccaa |
215 |
Q |
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| T |
441401 |
ccaccgtgcaaccaa |
441415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 42 - 215
Target Start/End: Complemental strand, 252260 - 252087
Alignment:
| Q |
42 |
aaaaatgtagaattgatttggtttaccgcaaaagctttaaatattagagtctgataaacgtgtggttgctattcaaaaacaatttaccttttttaaagct |
141 |
Q |
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|||| |||||||||||||||| | |||| |||||||| |||| ||||||||| |||||||| |||||||| || || |||||||||||||||||||| |
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| T |
252260 |
aaaagtgtagaattgatttggctcaccgtaaaagcttcgaatactagagtctggtaaacgtgcagttgctatccagaagcaatttaccttttttaaagcc |
252161 |
T |
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| Q |
142 |
aaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttggaagcacctaccgtgcaaccaa |
215 |
Q |
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| T |
252160 |
aaacataaatattttgatcaaattgcgtttgaatgttgtagacgtgagtttggaagcacccaccgtgcaaccaa |
252087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 23629347 - 23629441
Alignment:
| Q |
121 |
caatttaccttttttaaagctaaacataaatattttgatcaaattgcatttgattgttgtaaacgtgagtttggaagcacctaccgtgcaaccaa |
215 |
Q |
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| T |
23629347 |
caatttacctttttgaaagccaaacataaattttattatgaaatagcttttcattgccgtaaacgtgagttttggtgcactcaccgtgcaaccaa |
23629441 |
T |
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