View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_1 (Length: 720)
Name: NF20118_high_1
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 374 - 703
Target Start/End: Original strand, 502756 - 503085
Alignment:
| Q |
374 |
tgtgaatggtaaattatgttttaatgacatgatttaattaatgcactataaggctaagtacatgtgcaaattcatatgacataaaagaaaaacactattt |
473 |
Q |
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| T |
502756 |
tgtgaatggtaaattatgttttaatgaaatgatttaattaatgcactataaggctaagtacatgtgcaaattcatatgacataaaagaaaaatactattt |
502855 |
T |
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| Q |
474 |
ccaagttccaacagcaacatatatttgatatagatcttgaagccaggcatatagcaagaataagtattttataatcaagtttgaagttaaacaaaaactc |
573 |
Q |
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| T |
502856 |
ccaagttccaacagcaacatatatttgatatagatcttgaagccaagcatatagcaagaataagtattttataatcaagtttgaagttaaacaaaaactc |
502955 |
T |
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| Q |
574 |
actgcaaaatgataagtacagcacatgtagtgattatttgaagttaaatagacacaatttacttccaaaatgctaaattatttgctcacaacagaaactt |
673 |
Q |
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| T |
502956 |
actgcaaaatgataagtgcagcacatgtagtgattatttgaagttaaatagacacaatttacttccaaaatgctaaattatttgctcacaacagaaactt |
503055 |
T |
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| Q |
674 |
taatgctaaacacatgtcacaagtcagaac |
703 |
Q |
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| T |
503056 |
taatgctaaacacatgtcacaagtcagaac |
503085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 502257 - 502461
Alignment:
| Q |
79 |
tattgttattgagtggcagatatgtgacaccattggtaatattagtaaacatggtgaaatcatatgttatatgcttacttgtcaatatacatactgaata |
178 |
Q |
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| T |
502257 |
tattgttattgagtggcagatatgtgacaccattggtaatattagtaaacatggtcaaatcatatgttatatgcttacttgtcaatatacatactgaata |
502356 |
T |
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| Q |
179 |
ggccataagcatgtatcaagtcatatgttcttgggtaagttgaaaagggctcacacctgcaaacaaaacaatgttgtttacttcattatttctgcttcaa |
278 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
502357 |
gggcataagcatgtatcaagtcatatgttcttgggtaagttgaaaagggctcacacctgcaaacaaaacaatgttgtttccttcattatttctgcttcaa |
502456 |
T |
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| Q |
279 |
agggt |
283 |
Q |
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||||| |
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| T |
502457 |
agggt |
502461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 502222 - 502266
Alignment:
| Q |
13 |
aatatcagtaatgccacacctgcaacaaacattcatattgttatt |
57 |
Q |
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| T |
502222 |
aatatcagtaatgtcacacctgcaacaaacattcatattgttatt |
502266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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