View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_12 (Length: 429)
Name: NF20118_high_12
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 23 - 413
Target Start/End: Complemental strand, 4569968 - 4569578
Alignment:
| Q |
23 |
tgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgctaccacaaccaccgcctcgaactc |
122 |
Q |
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| T |
4569968 |
tgatcccttcaccgtcatctcctcctccctctcaaaaactctccctcattactacccactcgccgccacactccgctaccacaaccaccgcctcgaactc |
4569869 |
T |
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| Q |
123 |
ttctgctccaaaagccaagacagcgttcctctcattcacgccaccgtagacatcactctcgaatccgtaaactacctcgacgacgacccatcttcccatt |
222 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569868 |
ttctgctccaaaagccaagacagcgttcctctcatccacgccaccgtagacatcactctcgaatccgtaaactacctcgacgacgacccatcttcccatt |
4569769 |
T |
|
| Q |
223 |
ttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttacaagtgcggtgggttcactctcgg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4569768 |
ttgttgaacagttagtacccgacccaaaaccggaagaaggattaaaccatccatgcatgcttcaactcactgtttacaagtgcggtgggttcactctcgg |
4569669 |
T |
|
| Q |
323 |
tgcagcaattcaccattcactttgtgatggaatgggtgggacgcnnnnnnncaacacgatggcggagttggctcgtggcggggaacatatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4569668 |
tgcagcaattcaccattcactttgtgatggaatgggtgggacgctttttttcaacacgatggcggagttggctcgtggcggggaacatatc |
4569578 |
T |
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