View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_high_16 (Length: 419)
Name: NF20118_high_16
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 45 - 408
Target Start/End: Complemental strand, 4769451 - 4769088
Alignment:
| Q |
45 |
gaaattttaaatctatttgagaggaatagctcgatgaaagagttgtttgaccaatgaaaagctattaatcactgacaggacacttcgacttgtaataatt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
4769451 |
gaaattttaaatctatttgagaggaatagcttgatgaaagagttgtttgaccaatgaaaagctatgaatcactgacacgacacttcgacttgtaataatt |
4769352 |
T |
|
| Q |
145 |
tgagaaaatgagttaattgaatgtattcatgtgttgttgtgtcaatgtcgaatacactgacacatgttgaacaccggattagaggtgtcagtggtacacc |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4769351 |
tgagaaaatgagttaattgaatgtattcatgtgttgttgtgtcaatgtcgaatacactgacacatgttgaacaccggataagaggtgtcagtggtacacc |
4769252 |
T |
|
| Q |
245 |
aatgaaagtaaaacaaaataatgttttgtctattgtacctttgttgaatgaaaatgacaacatgacaatctgcagtaggctgtaaccacgggcttgttgt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769251 |
aatgaaagtaaaacaaaataatgttttgtctattgtacctttgttgaaagaaaatgacaacatgacaatctgcagtaggctgtaaccacgggcttgttgt |
4769152 |
T |
|
| Q |
345 |
gtggttgttatccaattgaacacttggaataatgtgtcttgttgtctctcatgggattgtgatg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4769151 |
gtggttgttatccaattgaacacttggaataatgtgtcttgttgtctctcatgggattgtgatg |
4769088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 29127664 - 29127694
Alignment:
| Q |
139 |
ataatttgagaaaatgagttaattgaatgta |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29127664 |
ataatttgagaaaatgagttaattgaatgta |
29127694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 50529749 - 50529721
Alignment:
| Q |
140 |
taatttgagaaaatgagttaattgaatgt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50529749 |
taatttgagaaaatgagttaattgaatgt |
50529721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 465598 - 465636
Alignment:
| Q |
140 |
taatttgagaaaatgagttaattgaatgtattcatgtgt |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
465598 |
taatttgagaaaatgagttaattgaatgtaattatgtgt |
465636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 2517114 - 2517147
Alignment:
| Q |
136 |
gtaataatttgagaaaatgagttaattgaatgta |
169 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
2517114 |
gtaataatttgagaaaatgaattaattgaatgta |
2517147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 25799155 - 25799187
Alignment:
| Q |
136 |
gtaataatttgagaaaatgagttaattgaatgt |
168 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
25799155 |
gtaataatttgagaaaatgaattaattgaatgt |
25799187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 49636878 - 49636845
Alignment:
| Q |
136 |
gtaataatttgagaaaatgagttaattgaatgta |
169 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
49636878 |
gtaataatttgagaaaatgaattaattgaatgta |
49636845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 34625742 - 34625774
Alignment:
| Q |
137 |
taataatttgagaaaatgagttaattgaatgta |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
34625742 |
taataatttgagaaaatgaattaattgaatgta |
34625774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 32369963 - 32369931
Alignment:
| Q |
137 |
taataatttgagaaaatgagttaattgaatgta |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
32369963 |
taataatttgagaaaatgaattaattgaatgta |
32369931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University