View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_20 (Length: 407)
Name: NF20118_high_20
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 8344742 - 8344445
Alignment:
| Q |
26 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
125 |
Q |
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| T |
8344742 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgttttcaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
8344643 |
T |
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| Q |
126 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagagtcttggt---nnnnnnnnnga |
222 |
Q |
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| T |
8344642 |
taaaccatatttttgtgtcctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagggtcttggtaaaaaaaaaaaaaa |
8344543 |
T |
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| Q |
223 |
aagagagaggtttatttagtgttagcaaaaatctcgtcctgttgttatgtcgaatttgatctgggcaggaatcgtgttgggtttgcttattataagta |
320 |
Q |
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| T |
8344542 |
aacagagaggtttattcagtgttagcaaaaatcccgtcctgttgttatgtcgaatttgatctgggcaggaatcgtgttgggtttgcttattataagta |
8344445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 8347488 - 8347192
Alignment:
| Q |
26 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
125 |
Q |
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| T |
8347488 |
tgtcaaatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttctcttgagtcgggcttgtttaaagtatagcttgactgacaag |
8347389 |
T |
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| Q |
126 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagagtcttggt--nnnnnnnnngaa |
223 |
Q |
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| T |
8347388 |
taaaccatatttttgtgacctatataattccatctctacatgtccgtcttgaaagagtaaagaagacaacaacgtagagtcttggttaaaaaaaaaagag |
8347289 |
T |
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| Q |
224 |
agagagaggtttatttagtgttagcaaaaatctcgtcctgttgttatgtcgaatttgatctgggcaggaatcgtgttgggtttgcttattataagta |
320 |
Q |
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| T |
8347288 |
agagaggggtttattcagtgttagcaaaaatcccgtcctgttgttatgtcgaatttgatctgggcaggaatcgtgttgggtttgcttattataagta |
8347192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 8330931 - 8330777
Alignment:
| Q |
26 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
125 |
Q |
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| T |
8330931 |
tgtcagatcatgaagaa-ttaatttacaaactcaatccaatatttgtttccattatttttcttgagtcgggcctgtttaaagtatagcttgactgacaag |
8330833 |
T |
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| Q |
126 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaaga |
181 |
Q |
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| T |
8330832 |
taaaccatatttttgtgacctatataatttcatctctacatgtatgtcttgaaaga |
8330777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 8330768 - 8330672
Alignment:
| Q |
224 |
agagagaggtttatttagtgttagcaaaaatctcgtcctgttgttatgtcgaatttgatctgggcaggaatcgtgttgggtttgcttattataagta |
320 |
Q |
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| T |
8330768 |
agagagaggtttatttagtgttagcaaaaatcccgtcctgttcttatgtccactttgatcaaggcaggaatcgggtttggtttgcttattataagta |
8330672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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