View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20118_high_22 (Length: 400)
Name: NF20118_high_22
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 383
Target Start/End: Complemental strand, 6084795 - 6084423
Alignment:
| Q |
11 |
taattcttcacaaaagtggttcttgctctccaattccacttctaatgctaaaatcttgtgataagcctcttttaattcagtttctgtaagctgagtgtca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6084795 |
taattcttcacaaaagtggttcttgctctccaattccacttctaatgctaaaatcttgtgataagcctcttttaattcagtttctgtaagctgagtgtca |
6084696 |
T |
|
| Q |
111 |
agatatctacttaaggatttttcattttgtatttgatcttcaagtcttctgttggattcttttaatgtttgcaactccaatcttaagttggcaatagtat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6084695 |
agatatctacttaaggatttttcattttgtatttgatcttcaagtcttctgttggattcttttaatgtttgcaactccaatcttaagttggcaatagtat |
6084596 |
T |
|
| Q |
211 |
tctctaattcctgaaatcgactcgtatccgcttgcaacttttctgcatctgtgcacattccaactttagcttcattttcactttgtgtctcatcccaatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6084595 |
tctctaattcctgaaatcgactcgtatccgcttgcaacttttctgcatctgtgcacattccaactttagcttcattttcactttgtgtctcatcccaatc |
6084496 |
T |
|
| Q |
311 |
aaatttctttttgatcgcatcctccatacttgaaacatcccaaagcgaaaagcagtgattgataatccattcc |
383 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6084495 |
aaatttctttttgatggcatcctccatacttgaaacatcccaaagcgaaaagcagtgattgataatccattcc |
6084423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 39106435 - 39106535
Alignment:
| Q |
279 |
gcttcattttcactttgtgtctcatcccaatcaaatttctttttgatcgcatcctccatacttgaaacatcccaaagcgaaaagcagtgattgataatcc |
378 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||| || ||||| ||||||| ||||| ||||||||| ||| |||||||||||||| || |||| |
|
|
| T |
39106435 |
gcttcactttcgcttcgtgtctcatcccaatcaaattgtttcttgatggcatccttcatacaagaaacatcctgaagtgaaaagcagtgattcattatcc |
39106534 |
T |
|
| Q |
379 |
a |
379 |
Q |
| |
|
| |
|
|
| T |
39106535 |
a |
39106535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University