View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_23 (Length: 394)
Name: NF20118_high_23
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 13308488 - 13308877
Alignment:
| Q |
1 |
caaattcagttccactatgaccaaggtaatggtggttcactagtacatctttaaatcaccaactaagaaaaataacaattagctcaccaaatctatggca |
100 |
Q |
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| T |
13308488 |
caaattcagttccactatgaccaaggtaatggtggttcactagtaaatctttaaatcaccaactaagaaaaataacgattagctcaccaaatctatggca |
13308587 |
T |
|
| Q |
101 |
ccgcactaagcatgacaagacccataaataaatcaagtacatgaggataacaaaagagaaatactcactgagtgtaatagtaaaatgttgtgccatgact |
200 |
Q |
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| T |
13308588 |
ccgcactaagcatgacaagacccataaataaatcaagtacatgaggataacaaaagagaaatactcactgagtgtaatagtaaaatgttgtgccatgact |
13308687 |
T |
|
| Q |
201 |
gacatggattttggcaattagtgatgccaaaagagaagagaatgagataactcgaaaagcgagcaaacaaacagggtgaatgtccttaaggcatggcttc |
300 |
Q |
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| T |
13308688 |
gacatggattttggcaattagtgatgccaaaagagaagagaatgagataactcgaaaaactagcaaacaaacagggtgaatgtccttaaggcatggcttc |
13308787 |
T |
|
| Q |
301 |
cacgcttcatcgccacacaaagtactctgattttctccgttgtcaaatgtgagatttcttgaactttcacgcttccatattcttcgacat |
390 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
13308788 |
cacgcttcatcgccacacaaagtactctggttttctccgttgtcaaatgtgagattccttgaactttcacgcttccatattgttagacat |
13308877 |
T |
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