View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20118_high_24 (Length: 371)

Name: NF20118_high_24
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20118_high_24
NF20118_high_24
[»] chr4 (8 HSPs)
chr4 (12-371)||(27570415-27570771)
chr4 (86-371)||(27412166-27412447)
chr4 (47-368)||(27422677-27422991)
chr4 (74-185)||(27415068-27415176)
chr4 (89-188)||(27425324-27425423)
chr4 (70-217)||(27566449-27566595)
chr4 (109-185)||(27419887-27419963)
chr4 (317-371)||(27563710-27563763)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 27570771 - 27570415
Alignment:
Q  12 agagacagtgttaggaggcaagaagataatgaatgttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570771 agagacagtgttaggaggcaagaagataatgaatgttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccat 27570672  T
Q  112 gatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27570671 gatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctattccatgaataggtctgttttatgg 27570572  T
Q  212 tagggtagacctctaagacaataccatgtgatcttatatatgttgctcttgtctccatgtagatgctatgactccatcctaatcctatactacagtatat 311  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||    
T  27570571 tagggtagacctctaagacaataccatgtgatcttatata---tgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatat 27570475  T
Q  312 ccctccaccaatcattcaagtagccaatggtttctcaattattcttttaactatatatat 371  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27570474 acctccaccaatcattcaagtagccaatggtttctcaattattcttttaactatatatat 27570415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 86 - 371
Target Start/End: Original strand, 27412166 - 27412447
Alignment:
Q  86 ttttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct 185  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27412166 ttttatttttgtaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct 27412265  T
Q  186 cttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttatatatgttgctcttgtctccatgtagatgctatgactc 285  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||| | |||||||    
T  27412266 attccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatcttatata---tgctcttgtctccttgtagattccatgactc 27412362  T
Q  286 catcctaatcctatactacagtatatccctccaccaatcattcaagtagccaatggtttctcaattattcttttaactatatatat 371  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  27412363 catcctgatcctatactacagtataaacctccaccaatcattcaagtagccaatggtttctcaa-tattcttttatctatatatat 27412447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 47 - 368
Target Start/End: Original strand, 27422677 - 27422991
Alignment:
Q  47 ttgaacgcaagttcatgagacattataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtcct 146  Q
    |||||| ||||  |||||| || ||| |||||||||||||   ||||||||| |||  ||||||  | ||||||||||||| ||| ||||||| | |||     
T  27422677 ttgaacacaagaacatgagccactatgaaccacattttat---atttttgcatgacagactccacaaaatttgcataccagaacaaaactttgcgatccc 27422773  T
Q  147 tgcattcctaattaagtatcaaggtcaattaaactttctcttccatgaataggtctgttttatggtagggtagacctctaagacaataccatgtgatctt 246  Q
    |||  ||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27422774 tgccatcctaatcaaatatgaaggtcaattaaactttctattccatgaataggtctgttttatggtagggtaggcctctaagacaataccatgtgatctt 27422873  T
Q  247 atatatgttgctcttgtctccatgtagatgctatgactccatcctaatcctatactacagtatatccctccaccaatcattcaagtagccaatggtttct 346  Q
    |||||   ||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||    
T  27422874 atata---tgctcttgtctccttgtagattccatgactccatcctgatcctatactacagtatatacttccactaataattcaagtagccaatggtttct 27422970  T
Q  347 caattattcttttaactatata 368  Q
    |||  ||||||||| |||||||    
T  27422971 caa-aattcttttatctatata 27422991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 27415068 - 27415176
Alignment:
Q  74 aaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtca 173  Q
    ||||||||||||| |||||    |||||| | || |||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||||    
T  27415068 aaccacattttatattatta---caagacaagcttcatgatatttgcataccaggacagaagtttgcggtccttgccttcttaattaagtatcaaggtca 27415164  T
Q  174 attaaactttct 185  Q
    ||||||||||||    
T  27415165 attaaactttct 27415176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 188
Target Start/End: Original strand, 27425324 - 27425423
Alignment:
Q  89 tatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttctctt 188  Q
    ||||||||| |||| |||||||||||||||||||||| | || |||||||| ||||| ||| || |||| |||||| |||||| ||||||||||||||||    
T  27425324 tatttttgccagacaaactccatgatatttgcatacctgaacggaactttgcggtccctgccttgctaaataagtaacaaggttaattaaactttctctt 27425423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 27566595 - 27566449
Alignment:
Q  70 tataaaccacattttattttatttttgcaagaccaactccatgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaag 169  Q
    ||||||||||||||||| |  ||||| || ||| || ||||| | ||||||||||||  ||||||||||| ||||| |||||| |||| |||||| || |    
T  27566595 tataaaccacattttatatagttttt-caggacaaattccattaaatttgcataccataacagaactttgcggtccctgcattgctaaataagtaacatg 27566497  T
Q  170 gtcaattaaactttctcttccatgaataggtctgttttatggtagggt 217  Q
    ||||||||||||||||||| |||  ||||| ||||||| |||| ||||    
T  27566496 gtcaattaaactttctcttgcattgataggcctgttttttggtggggt 27566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 27419887 - 27419963
Alignment:
Q  109 catgatatttgcataccaggacagaactttgaggtccttgcattcctaattaagtatcaaggtcaattaaactttct 185  Q
    |||||||||||| |||||| ||||||||| | ||||| ||| ||| |||||||||||||||||||||||||||||||    
T  27419887 catgatatttgcttaccagaacagaacttcgcggtccctgccttcttaattaagtatcaaggtcaattaaactttct 27419963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 27563763 - 27563710
Alignment:
Q  317 caccaatcattcaagtagccaatggtttctcaattattcttttaactatatatat 371  Q
    ||||||||||||||||||||||| ||||  ||| |||||||||| ||||||||||    
T  27563763 caccaatcattcaagtagccaatagttttgcaa-tattcttttatctatatatat 27563710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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