View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20118_high_30 (Length: 331)

Name: NF20118_high_30
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20118_high_30
NF20118_high_30
[»] chr1 (6 HSPs)
chr1 (1-313)||(7554374-7554686)
chr1 (40-310)||(29658800-29659070)
chr1 (249-313)||(19468334-19468398)
chr1 (171-313)||(9581193-9581335)
chr1 (43-184)||(29718953-29719094)
chr1 (171-313)||(9586761-9586903)
[»] chr5 (6 HSPs)
chr5 (40-181)||(41901568-41901709)
chr5 (21-160)||(32267381-32267520)
chr5 (51-181)||(41889587-41889717)
chr5 (171-307)||(41901376-41901512)
chr5 (171-286)||(32267597-32267712)
chr5 (43-84)||(17205527-17205568)
[»] chr8 (6 HSPs)
chr8 (42-181)||(27922435-27922574)
chr8 (42-181)||(18315306-18315445)
chr8 (101-159)||(32151287-32151345)
chr8 (174-281)||(34936027-34936134)
chr8 (42-160)||(17636455-17636572)
chr8 (42-147)||(28246360-28246465)
[»] chr3 (5 HSPs)
chr3 (21-160)||(51113835-51113974)
chr3 (42-181)||(13470765-13470904)
chr3 (42-181)||(51120926-51121065)
chr3 (42-160)||(51764494-51764612)
chr3 (177-271)||(1657378-1657472)
[»] chr2 (2 HSPs)
chr2 (20-160)||(45245139-45245279)
chr2 (42-168)||(1037710-1037836)
[»] chr6 (19 HSPs)
chr6 (19-181)||(9411259-9411421)
chr6 (49-181)||(6585270-6585402)
chr6 (20-160)||(6402765-6402905)
chr6 (21-168)||(7994228-7994375)
chr6 (176-313)||(9411482-9411619)
chr6 (20-181)||(14820598-14820759)
chr6 (42-145)||(6415893-6415996)
chr6 (43-177)||(19632367-19632501)
chr6 (43-168)||(6603248-6603373)
chr6 (42-167)||(11936322-11936447)
chr6 (42-167)||(11948302-11948427)
chr6 (42-181)||(14818309-14818448)
chr6 (42-181)||(6432088-6432227)
chr6 (42-160)||(7119084-7119202)
chr6 (20-85)||(6394769-6394834)
chr6 (173-289)||(7119284-7119397)
chr6 (42-160)||(7131562-7131680)
chr6 (173-289)||(7131762-7131875)
chr6 (173-291)||(10579593-10579708)
[»] chr4 (18 HSPs)
chr4 (42-156)||(546840-546954)
chr4 (42-168)||(55908774-55908900)
chr4 (101-167)||(1524533-1524599)
chr4 (20-181)||(1548457-1548618)
chr4 (2-181)||(8184063-8184242)
chr4 (20-181)||(1513440-1513598)
chr4 (43-181)||(640843-640981)
chr4 (40-181)||(7307785-7307926)
chr4 (173-291)||(1600546-1600664)
chr4 (42-159)||(558425-558542)
chr4 (217-306)||(8186930-8187019)
chr4 (42-91)||(53761892-53761941)
chr4 (48-120)||(1489455-1489527)
chr4 (102-181)||(553466-553545)
chr4 (98-181)||(570334-570417)
chr4 (42-181)||(12121490-12121629)
chr4 (42-84)||(553406-553448)
chr4 (20-84)||(1524613-1524677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (42-168)||(670-796)
[»] chr7 (2 HSPs)
chr7 (19-156)||(15092209-15092346)
chr7 (43-156)||(10614521-10614634)
[»] scaffold0014 (1 HSPs)
scaffold0014 (173-229)||(88943-88999)


Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 7554374 - 7554686
Alignment:
Q  1 tcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7554374 tcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcag 7554473  T
Q  101 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaaatgtctaatgttatgacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7554474 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaaatgtctaatgttatgacat 7554573  T
Q  201 cttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7554574 cttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaagactttgatgt 7554673  T
Q  301 tttcatctcttaa 313  Q
    |||||||||||||    
T  7554674 tttcatctcttaa 7554686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 310
Target Start/End: Complemental strand, 29659070 - 29658800
Alignment:
Q  40 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 139  Q
    ||||||||||||  |||||||| || ||||| || |||||||||||   ||| | ||  ||||||| ||| ||||| |||| ||||||| |||| || ||    
T  29659070 gcgtgcagttttgaaccacatgttttactccattctctgtgacattcgtacaacattccagtaacaattgcaaaaggccacaacaactcgttgatatgat 29658971  T
Q  140 atagagtgcttcatcatcaacacttgtatacgataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtca 239  Q
    || |||||||| |||||||||  | ||||| || |||||||||||  |||| |||  ||| | | ||||||  ||| |||||  ||||| ||||| |||     
T  29658970 atggagtgctttatcatcaactttggtatatgacaagttcaaatgcttaatcttactacaacattttaaaacttgagaaatagtttcttcagatacgtcc 29658871  T
Q  240 tagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctct 310  Q
    |  ||||   ||||||||||||  || || ||||| || |||||||| |||| | ||||||||| ||||||    
T  29658870 ttccaatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctct 29658800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 19468398 - 19468334
Alignment:
Q  249 ttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcatctcttaa 313  Q
    ||||||||||||||||  ||||||||||| |||||||| |||| | ||||||||||||| |||||    
T  19468398 ttcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaa 19468334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 9581193 - 9581335
Alignment:
Q  171 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 270  Q
    |||| ||||||||||||||| | |  ||||||| ||||||  ||| ||||||||  ||||||||||| | ||||||    || |||||||||||  ||||    
T  9581193 gatatgttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaat 9581292  T
Q  271 tgggaaagatggaagctaacactttgatgttttcatctcttaa 313  Q
    |||| || || ||||| |||| | ||||||||| |||||||||    
T  9581293 tggggaaaattgaagcaaacattatgatgtttttatctcttaa 9581335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 184
Target Start/End: Complemental strand, 29719094 - 29718953
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 142  Q
    |||||||||  |||||||| |||||||| || |||||||||||   ||| | ||  ||||||| ||| ||||| |||| ||||||| |||| || ||||     
T  29719094 tgcagttttgaaccacatgtttcactccattctctgtgacattcatacaactttccagtaacaattgcaaaaggccacaacaactcgttgatatgatatg 29718995  T
Q  143 gagtgcttcatcatcaacacttgtatacgataagttcaaatg 184  Q
    ||||| || |||||||||  | ||||| || |||||||||||    
T  29718994 gagtgatttatcatcaacgttggtatatgacaagttcaaatg 29718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 9586761 - 9586903
Alignment:
Q  171 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 270  Q
    |||| ||||||||||||||| | |  |||||||  |||||  ||| ||||||||  ||||||||||| | ||||||    || |||||||||||  ||||    
T  9586761 gatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaat 9586860  T
Q  271 tgggaaagatggaagctaacactttgatgttttcatctcttaa 313  Q
    |||| || || ||||| |||| | ||||||||| |||||||||    
T  9586861 tggggaaaattgaagcaaacattatgatgtttttatctcttaa 9586903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 41901709 - 41901568
Alignment:
Q  40 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 139  Q
    |||| ||||||||||||||||||||||||||||| | |||||||| || |||  ||| |||| ||| ||  |||||||||| ||||||||||||||||||    
T  41901709 gcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcat 41901610  T
Q  140 atagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    ||| |||||||||||||||||  ||||||| || ||||||||    
T  41901609 ataaagtgcttcatcatcaacttttgtatatgacaagttcaa 41901568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 32267381 - 32267520
Alignment:
Q  21 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 120  Q
    |||||||||| | | ||| |||||||||||||||| ||||||||||||||||| | ||||| || || |||   ||||||| ||| ||  ||||| ||||    
T  32267381 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccac 32267480  T
Q  121 cacaactctttgagatcatatagagtgcttcatcatcaac 160  Q
     ||||||||||||||||||||| |||||||||||||||||    
T  32267481 aacaactctttgagatcatataaagtgcttcatcatcaac 32267520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 41889717 - 41889587
Alignment:
Q  51 tctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgctt 150  Q
    ||||||||||| ||||||||||| | |||||||| || |||   ||||||||||| ||   |||| || | |||||||||||||||| |||| |||| ||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  151 catcatcaacacttgtatacgataagttcaa 181  Q
    ||||||||||  ||||||| |||||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaa 41889587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 41901512 - 41901376
Alignment:
Q  171 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 270  Q
    ||||||||||||||||||||||||  |||  | |||||||  |||| ||||||||||| | |||||  | | |||||  |||||||||||||||  ||||    
T  41901512 gataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaacaattgctcaaatcaagcagctgcaaat 41901413  T
Q  271 tgggaaagatggaagctaacactttgatgttttcatc 307  Q
    |||| || |||||||| |||| | |||||| ||||||    
T  41901412 tggggaaaatggaagcgaacattgtgatgtcttcatc 41901376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 32267597 - 32267712
Alignment:
Q  171 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 270  Q
    ||||||||||||||||||||||||  |||| | |||||||  ||||  |||||||||| |||||||  | | |||||  |||||||||||||||  ||||    
T  32267597 gataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat 32267696  T
Q  271 tgggaaagatggaagc 286  Q
    |||  |||||||||||    
T  32267697 tggagaagatggaagc 32267712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacat 84  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 27922435 - 27922574
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||||||||||| ||||||||||| | ||||| || || |||   || |||| ||| ||  ||||| |||| ||||||||||||||||||||    
T  27922435 gtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatat 27922534  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | |||||||||||||||||| ||||||| || ||||||||    
T  27922535 aaagtgcttcatcatcaacatttgtatatgacaagttcaa 27922574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 18315445 - 18315306
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||||||||||| |||  |||| || |||||||||| |  ||| | ||  | ||||||||| ||||| | || ||||||||||||||||| ||    
T  18315445 gtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatcacat 18315346  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |||||||||||||||||||  ||||||  || ||||||||    
T  18315345 agagtgcttcatcatcaacttttgtatgtgacaagttcaa 18315306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 32151287 - 32151345
Alignment:
Q  101 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaa 159  Q
    ||||||||| ||||| |||| ||||||||||||||||| |||||||| |||||||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaa 32151345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 34936134 - 34936027
Alignment:
Q  174 aagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgg 273  Q
    |||| |||||||||||||| |  |||||| |||||||  ||| |||||||||  ||||||||| ||  |||||   ||||||||||||| |  |||||||    
T  34936134 aagtacaaatgtctaatgtcacaacatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgg 34936035  T
Q  274 gaaagatg 281  Q
    ||||||||    
T  34936034 gaaagatg 34936027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 17636572 - 17636455
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| ||||||| ||||||| ||||||| || || ||||||||| ||||   || |||| ||| ||| ||||||| |  ||||||||||||||||| ||    
T  17636572 gtgcaattttctagcacatgcctcactcctttctc-gtgacattaacacaatattcaagtgacaattgcaaaagtctaagacaactctttgagatcacat 17636474  T
Q  142 agagtgcttcatcatcaac 160  Q
    | | ||||||||| |||||    
T  17636473 acaatgcttcatcgtcaac 17636455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 28246465 - 28246360
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| ||||| ||||||||| ||||||  || |||||||||   |||||   ||||||| ||||||| ||||| || | ||||||||||||||||  ||    
T  28246465 gtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccgctacaactctttgagatccaat 28246366  T
Q  142 agagtg 147  Q
    ||||||    
T  28246365 agagtg 28246360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 51113974 - 51113835
Alignment:
Q  21 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 120  Q
    |||||||||||| | |||   ||||| |||||||||||||||||||||||||| ||||||||||  | |||   ||| ||||||||||| ||||| ||||    
T  51113974 aaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccac 51113875  T
Q  121 cacaactctttgagatcatatagagtgcttcatcatcaac 160  Q
     ||||||||| ||||||| |||||||| ||||||||||||    
T  51113874 aacaactcttcgagatcacatagagtgtttcatcatcaac 51113835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 13470904 - 13470765
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||| |||   || |||||| ||||| ||||| |||| |||| |||||||||||||||    
T  13470904 gtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatat 13470805  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |||||| || ||||| |||  ||||||  || ||||||||    
T  13470804 agagtgttttatcattaacctttgtatttgacaagttcaa 13470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 51121065 - 51120926
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    ||| | ||  ||  ||| ||| ||||| |||| ||||||||||||||| | ||    
T  51121065 gtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattacat 51120966  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | |||  |||||||||||| ||||||| ||| ||||||||    
T  51120965 atagtttttcatcatcaactcttgtatgcgacaagttcaa 51120926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 51764612 - 51764494
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||| |||||||| ||||||||||| ||  |||||||||||||   ||  ||||| ||||| ||||| || | |||| |||||||||||  ||    
T  51764612 gtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcat 51764513  T
Q  142 agagtgcttcatcatcaac 160  Q
    |||||| || |||||||||    
T  51764512 agagtgttttatcatcaac 51764494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 1657378 - 1657472
Alignment:
Q  177 ttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaatt 271  Q
    ||||||||||||||||||  |||| |  ||||||  |||| ||||||||||| ||||||||| | |||||   |||||||||| |||| ||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatgtctttgcaatggctcaaatcaagtagctgtaaatt 1657472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 45245279 - 45245139
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 119  Q
    |||||| |||||| | ||| | ||||| |||||||||||||| ||||||||||| |||||||||| || ||||  ||| | ||| ||||| ||||| |||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  120 ccacaactctttgagatcatatagagtgcttcatcatcaac 160  Q
    | ||||||||||||||||| || ||||| ||||||||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaac 45245139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 1037836 - 1037710
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||| || ||||| ||||| || || |||||||| | ||||||   ||  || |||||||||||||| |||| |||| |||||||||||||||    
T  1037836 gtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatat 1037737  T
Q  142 agagtgcttcatcatcaacacttgtat 168  Q
    |||||| |||||||||||||| |||||    
T  1037736 agagtgtttcatcatcaacacatgtat 1037710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 9411259 - 9411421
Alignment:
Q  19 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcc 118  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||||||| |||||||||| ||| ||||||||| ||| | ||  ||||||||||| ||||||||    
T  9411259 gcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcc 9411358  T
Q  119 accacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    || |||| |||||||||||  |||||||  ||||||   ||||| |||||| || ||||||||    
T  9411359 acgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaa 9411421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 6585402 - 6585270
Alignment:
Q  49 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 148  Q
    ||||||||||||| |||| |||||| ||||||||||| ||||| ||||| ||||| ||||  |||||  ||  ||||||||||||||||| ||||||||     
T  6585402 tttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 6585303  T
Q  149 ttcatcatcaacacttgtatacgataagttcaa 181  Q
    ||||||||||||  ||||||  || ||||||||    
T  6585302 ttcatcatcaacctttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 6402765 - 6402905
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 119  Q
    ||||| ||||||| | ||| | || |||||||||| |||||| ||| ||||||||||||||||||||| |||  || | | ||| ||||  ||||| |||    
T  6402765 caaataaatctctctcagttgtgtacagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagccca 6402864  T
Q  120 ccacaactctttgagatcatatagagtgcttcatcatcaac 160  Q
    | |||| |||||||||||| |||||||| ||||||||||||    
T  6402865 ctacaattctttgagatcacatagagtgtttcatcatcaac 6402905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 7994375 - 7994228
Alignment:
Q  21 aaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 120  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||||||||  || || |||| || |||   || |||||| ||||| |||||||||     
T  7994375 aaataaatctctttcagttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccag 7994276  T
Q  121 cacaactctttgagatcatatagagtgcttcatcatcaacacttgtat 168  Q
     |||| |||||||||||| ||| |||| ||| |||| ||| |||||||    
T  7994275 aacaattctttgagatcacatatagtgtttcgtcattaacccttgtat 7994228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 9411482 - 9411619
Alignment:
Q  176 gttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattggga 275  Q
    |||||||||||||||||||  |||||| |||||||  || ||||||||||| |||||||||| | | ||     |||||||||||||||  ||||||||     
T  9411482 gttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaattgggg 9411581  T
Q  276 aagatggaagctaacactttgatgttttcatctcttaa 313  Q
    || |||||||| |||  ||||||||||| |||||||||    
T  9411582 aaaatggaagcaaaccttttgatgtttttatctcttaa 9411619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 14820598 - 14820759
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 119  Q
    ||||||||||||| | ||  | |||||||||| ||||||||| ||||| ||||| |||||||||| || ||||  || |||||| | | | ||||| |||    
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  120 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | |||| |||| ||||||||||| |||| ||||| ||||||  ||||||  |||||||||||    
T  14820698 caacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaa 14820759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 6415893 - 6415996
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||||||   || |||||| ||||| ||||| || | |||| |||||||||||| ||    
T  6415893 gtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacat 6415992  T
Q  142 agag 145  Q
    ||||    
T  6415993 agag 6415996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 19632367 - 19632501
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 142  Q
    |||||||||||||||| || ||||||||||| ||||||| |||| ||||   ||| ||||| ||||| ||||| |||| |||| |||||||||||| | |    
T  19632367 tgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa 19632466  T
Q  143 gagtgcttcatcatcaacacttgtatacgataagt 177  Q
     |||   |||||||||||  |||||||||| ||||    
T  19632467 aagttgctcatcatcaacctttgtatacgacaagt 19632501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 6603373 - 6603248
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 142  Q
    ||||||||||||||||||| |||||||| || |||||||||| || |||   ||| | ||| ||||  ||||| |||  ||||||||||||||||  |||    
T  6603373 tgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcata 6603274  T
Q  143 gagtgcttcatcatcaacacttgtat 168  Q
    || || |||||||||||||| |||||    
T  6603273 gactgtttcatcatcaacacctgtat 6603248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 11936447 - 11936322
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||   |||||   ||||||| ||||||| ||||| |||| ||||||||||||||||  ||    
T  11936447 gtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaat 11936348  T
Q  142 agagtgcttcatcatcaacacttgta 167  Q
    |||||| || ||| ||||| ||||||    
T  11936347 agagtgatttatcgtcaactcttgta 11936322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 11948427 - 11948302
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| ||||| ||||||||| ||||||| || |||||||||   |||||   ||||||| ||||||| ||||| |||| ||||||||||||||||  ||    
T  11948427 gtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcccactacaactctttgagatccaat 11948328  T
Q  142 agagtgcttcatcatcaacacttgta 167  Q
    |||||| || ||| ||||| ||||||    
T  11948327 agagtgatttatcgtcaactcttgta 11948302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 14818309 - 14818448
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||||| ||||| ||||| ||||| ||||||||||||| |||   || |||||| | | | ||||| |||  |||| |||| ||||||||||    
T  14818309 gtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcatat 14818408  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | |||| ||||| ||||||  ||||||  |||||||||||    
T  14818409 aaagtgtttcattatcaacctttgtatttgataagttcaa 14818448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 6432088 - 6432227
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| |||||||||||| | ||||||||||| | |||||||||||||||    |  || || ||||| | ||| |||| |||| ||||| |||||| ||    
T  6432088 gtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatcacat 6432187  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | |||| |||||||||||| |||||||  || ||||||||    
T  6432188 aaagtgtttcatcatcaacgcttgtatttgacaagttcaa 6432227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 7119084 - 7119202
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||| ||||||| |||||| | |||| |||||||| || |||  |||| ||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7119084 gtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 7119183  T
Q  142 agagtgcttcatcatcaac 160  Q
     ||||| ||||||||||||    
T  7119184 ggagtgtttcatcatcaac 7119202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 6394769 - 6394834
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacatt 85  Q
    ||||||||||||| | | | | |||||||||||||||||||| | ||| |||||||||||||||||    
T  6394769 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatt 6394834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 7119284 - 7119397
Alignment:
Q  173 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 272  Q
    ||||||||||||| |||| |||  |||||| |||||||  ||| ||||||||||   |||||||| || |||| | ||||||||||| || | |||||||    
T  7119284 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7119380  T
Q  273 ggaaagatggaagctaa 289  Q
    || || | |||||||||    
T  7119381 gggaaaaaggaagctaa 7119397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 7131562 - 7131680
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||| ||||||| |||||| | || | |||||||| || |||  |||| ||||| ||||  ||||| || | |||| |||| ||||||| ||    
T  7131562 gtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcacat 7131661  T
Q  142 agagtgcttcatcatcaac 160  Q
     ||||| ||||||||||||    
T  7131662 ggagtgtttcatcatcaac 7131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 7131762 - 7131875
Alignment:
Q  173 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 272  Q
    ||||||||||||| |||| |||  |||||| |||||||  ||| ||||||||||   |||||||| || |||| | ||||||||||| || | |||||||    
T  7131762 taagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattg 7131858  T
Q  273 ggaaagatggaagctaa 289  Q
    || || | |||||||||    
T  7131859 gggaaaaaggaagctaa 7131875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 10579708 - 10579593
Alignment:
Q  173 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 272  Q
    ||||||||||||  |||| |||  |||||||| | |||  ||||||||||||||   ||||||||  | |||| | ||||||||||||||||  ||||||    
T  10579708 taagttcaaatgcttaatcttaccacatcttcctgaaacttgaaaaataccttc---agatatgtattcgcaagtattcaaatcaagcagctgcaaattg 10579612  T
Q  273 ggaaagatggaagctaaca 291  Q
    || || | |||||||||||    
T  10579611 gggaaaaaggaagctaaca 10579593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 546840 - 546954
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||||| |||||| ||||||||||| |||||||||| |  |||| |||  ||||||| ||  ||||| |||| ||||||||||||||||| ||    
T  546840 gtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcacat 546939  T
Q  142 agagtgcttcatcat 156  Q
    |||||| ||||||||    
T  546940 agagtgtttcatcat 546954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 55908900 - 55908774
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||| || ||||| ||||| || || |||||||| | ||||||   ||  || |||||||||||||| |||| |||| |||||||||||||||    
T  55908900 gtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcatat 55908801  T
Q  142 agagtgcttcatcatcaacacttgtat 168  Q
    |||||| |||||||||||||| |||||    
T  55908800 agagtgtttcatcatcaacacatgtat 55908774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 1524599 - 1524533
Alignment:
Q  101 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgta 167  Q
    ||||||||| ||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgta 1524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 1548618 - 1548457
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 119  Q
    ||||||||| ||| | ||| ||| |||||||||| | | ||| ||||||||||| ||||||| ||| | ||| | |||  ||||||  || ||||| |||    
T  1548618 caaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtgcaaaagccca 1548519  T
Q  120 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | ||||||||||||||||| || ||||| ||||||||||| ||||||||  || ||||||||    
T  1548518 caacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaa 1548457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 8184242 - 8184063
Alignment:
Q  2 cactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtga-cattatcacatcctttaag 100  Q
    ||||||| |||| |||  |||||| ||| |||| ||| | ||||| ||||||| |||||||||||||||||  ||||||| |||| |||||   ||  ||    
T  8184242 cactttatcacagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatt-tcacaattttccag 8184144  T
Q  101 taacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    ||||||||  ||||| |||| |||||||||||||||   ||||||||||  ||||||||| |||||||  || ||||||||    
T  8184143 taacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaa 8184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 1513598 - 1513440
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcca 119  Q
    |||||| |||||| | ||| | ||||| ||||||| |||| ||||||||||| | ||||||||| ||   || ||||| ||||  ||||| ||||| |||    
T  1513598 caaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaata---caacctttcagtatgagttgcaaaagccca 1513502  T
Q  120 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    | ||||| ||||||||| |  ||||||| ||||||||||||| ||||| | || ||||||||    
T  1513501 cgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaa 1513440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 640843 - 640981
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 142  Q
    ||||||||||||||||||| ||||||||||| | ||| |||| || |||  |||  |||||||| || ||||| ||||  ||| |||||||| |||  ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  143 gagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    ||||| ||||||||||||  ||||||  || ||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaa 640981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 7307785 - 7307926
Alignment:
Q  40 gcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcat 139  Q
    ||||||||||||||||||||||||||| |||  |    |||||| ||  ||| ||||  |||||||| || ||||| | || ||||||||||||||||||    
T  7307785 gcgtgcagttttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttgagatcat 7307884  T
Q  140 atagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |   |||||||||||||||||   |||||| || ||||||||    
T  7307885 acgtagtgcttcatcatcaacttctgtatatgacaagttcaa 7307926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 291
Target Start/End: Original strand, 1600546 - 1600664
Alignment:
Q  173 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattg 272  Q
    |||||||||||||||||| |||  | |||| |||||||  ||| |||||||||||| |||||||| |  |||| |  ||||||||||||| |  ||||||    
T  1600546 taagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattg 1600645  T
Q  273 ggaaagatggaagctaaca 291  Q
    |||||  ||||||| ||||    
T  1600646 ggaaaattggaagcaaaca 1600664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 558425 - 558542
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||||||||||| ||||||||||||||| || ||||| ||   |  |||   || |||  ||||||  ||||| |||| ||||||||||||||||| ||    
T  558425 gtgcagttttctagcacatgcttcactcctttatctgtaacgcaaatacaaaattgaagatacagttccaaaagcccacgacaactctttgagatcacat 558524  T
Q  142 agagtgcttcatcatcaa 159  Q
     |||||||||||||||||    
T  558525 ggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 8187019 - 8186930
Alignment:
Q  217 aaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaattgggaaagatggaagctaacactttgatgttttcat 306  Q
    |||||||||||| |||||||||||||||||   |||||||||||| ||  |||||||| || | ||||| ||||| || || ||||||||    
T  8187019 aaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaataaggaagataacatttcgaggttttcat 8186930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 53761941 - 53761892
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcaca 91  Q
    |||||||||||| ||||||| ||||||||||| || ||||||||||||||    
T  53761941 gtgcagttttcttccacatgtttcactcccttgtccgtgacattatcaca 53761892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 1489527 - 1489455
Alignment:
Q  48 ttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccac 120  Q
    ||||||| |||||||||||||||||| ||||||||||||  ||| ||||  ||||| ||||| ||||| ||||    
T  1489527 ttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccac 1489455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 553466 - 553545
Alignment:
Q  102 aacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |||||||| ||||| |||  |||||||||||| |||| ||  ||||||||||||||||| |||||| | || ||||||||    
T  553466 aacagttgcaaaagcccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaa 553545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 570334 - 570417
Alignment:
Q  98 aagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |||||||||||| ||||| || | |||||||||||| |||| ||||||| |||| | |||||| | |||||| || ||||||||    
T  570334 aagtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaa 570417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 181
Target Start/End: Complemental strand, 12121629 - 12121490
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    ||||| |||||||||||||||||||||||| | |||||||||  |   || | ||  ||| | ||||| ||||| ||||  |||| ||||||||| |       
T  12121629 gtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacgg 12121530  T
Q  142 agagtgcttcatcatcaacacttgtatacgataagttcaa 181  Q
    |||||| ||||||||||||| ||||||| || ||||||||    
T  12121529 agagtgtttcatcatcaacatttgtatatgacaagttcaa 12121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 553406 - 553448
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacat 84  Q
    |||||||||||||||||||| |||||||| || ||||||||||    
T  553406 gtgcagttttctaccacatgattcactcctttatctgtgacat 553448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 1524677 - 1524613
Alignment:
Q  20 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacat 84  Q
    ||||||||||||| | ||| | ||||||||||||| |||||  ||||||||| | ||||||||||    
T  1524677 caaattaatctctctcagttgtgtgcagttttctatcacataattcactcccctctctgtgacat 1524613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 796 - 670
Alignment:
Q  42 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatat 141  Q
    |||||||||||||| ||||| ||||| || || ||| |||| | ||||||   ||  |||||||||||||| || |||| |||| |||| ||||||||||    
T  796 gtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatcatat 697  T
Q  142 agagtgcttcatcatcaacacttgtat 168  Q
    |||||| ||||||||| ||||||||||    
T  696 agagtgtttcatcatcgacacttgtat 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 15092346 - 15092209
Alignment:
Q  19 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtcc 118  Q
    |||||||||||||| | | | | ||||||||||||| |||||| |||||||||  |||||||||||||| |||   || |||||| ||||| ||||| ||    
T  15092346 gcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccc 15092247  T
Q  119 accacaactctttgagatcatatagagtgcttcatcat 156  Q
    || |||| |||||||||||  |||||||| || |||||    
T  15092246 acaacaattctttgagatcgcatagagtgttttatcat 15092209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 10614521 - 10614634
Alignment:
Q  43 tgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttaagtaacagttgtaaaagtccaccacaactctttgagatcatata 142  Q
    ||||||||||||||||||| |||||||| | |||||||||||||| | |   || |||||| ||||| ||||| |||| |||  |||| ||||||| |||    
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata 10614620  T
Q  143 gagtgcttcatcat 156  Q
    ||||| || |||||    
T  10614621 gagtgttttatcat 10614634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 88943 - 88999
Alignment:
Q  173 taagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttcttt 229  Q
    |||||||||||||||||| |||  |||||| |||||||| |||  ||||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttcttt 88999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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