View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_33 (Length: 314)
Name: NF20118_high_33
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 33854352 - 33854179
Alignment:
| Q |
123 |
aaaaattatgagctagctaggtgaaaacaaaagttttctctacttcacactccactcagagaggctctaaaaagtaggattgatgtcaattaacaatggt |
222 |
Q |
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| T |
33854352 |
aaaaattatgagctagctaggtgaaaacaaaagttttctctacttcacactccactcagagagactctaaaaagtaggattgatgtcaattaacaatggt |
33854253 |
T |
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| Q |
223 |
ccctactcactcttaaaaattaactattgatacaataatggtacgttcggctaagtaaaataagtatatttgta |
296 |
Q |
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| T |
33854252 |
ccctactcactcttaaaaattaactattgatacaataatggtacgttcggctaagtaaaataagtatatttgta |
33854179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 33865594 - 33865453
Alignment:
| Q |
4 |
ctgctctccgattccattcatatcacccaaacccatcctcaagtttgtgaacaagcacaaacaatattactaaaatcatgtttatcttgaaacaactcaa |
103 |
Q |
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| T |
33865594 |
ctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaagaagc----ataatattacaaatatcatgtttatcttggaaaaactaga |
33865499 |
T |
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| Q |
104 |
acctttcatttttt-aaatgaaaaattatgagctagctaggtgaaa |
148 |
Q |
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| T |
33865498 |
acctttcattttttcaaatgaaaaattatttgctagctagatgaaa |
33865453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 33855235 - 33855101
Alignment:
| Q |
4 |
ctgctctccgattccattcatatcacccaaacccatcctcaagtttgtgaacaagcacaaacaatattactaaaatcatgtttatcttgaaacaactcaa |
103 |
Q |
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| T |
33855235 |
ctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaagaagc----ataatattacaaatatcatgtttatcttggaaaaactaga |
33855140 |
T |
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| Q |
104 |
acctttcatttttt-aaatgaaaaattatgagctagcta |
141 |
Q |
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| T |
33855139 |
acctttcattttttcaaatgaaaaattatttgctagcta |
33855101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 33854930 - 33854896
Alignment:
| Q |
223 |
ccctactcactcttaaaaattaactattgatacaa |
257 |
Q |
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| T |
33854930 |
ccctactcactcttaaaaattaactattggtacaa |
33854896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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