View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20118_high_35 (Length: 284)

Name: NF20118_high_35
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20118_high_35
NF20118_high_35
[»] chr6 (29 HSPs)
chr6 (16-266)||(27592690-27592940)
chr6 (16-266)||(27679213-27679463)
chr6 (16-266)||(27677286-27677534)
chr6 (16-266)||(27706073-27706322)
chr6 (16-262)||(26802709-26802952)
chr6 (20-262)||(27604379-27604621)
chr6 (16-133)||(27698297-27698414)
chr6 (16-97)||(27718218-27718299)
chr6 (16-97)||(27610841-27610922)
chr6 (55-140)||(25538846-25538931)
chr6 (16-181)||(26861880-26862039)
chr6 (19-153)||(27530983-27531114)
chr6 (55-142)||(25580025-25580112)
chr6 (55-140)||(26143171-26143256)
chr6 (43-262)||(26646773-26646986)
chr6 (43-262)||(26752741-26752954)
chr6 (55-113)||(26056232-26056290)
chr6 (55-113)||(26076202-26076260)
chr6 (55-140)||(25482048-25482133)
chr6 (16-151)||(26884432-26884564)
chr6 (221-262)||(27698259-27698300)
chr6 (80-142)||(25511271-25511333)
chr6 (16-81)||(27427461-27427526)
chr6 (223-262)||(27427287-27427326)
chr6 (181-259)||(28786668-28786744)
chr6 (181-259)||(28792789-28792865)
chr6 (43-87)||(28781433-28781477)
chr6 (43-87)||(28786572-28786616)
chr6 (43-87)||(28792693-28792737)
[»] scaffold0349 (2 HSPs)
scaffold0349 (16-97)||(14195-14276)
scaffold0349 (16-97)||(3259-3340)
[»] chr4 (6 HSPs)
chr4 (157-258)||(18731177-18731274)
chr4 (194-258)||(18655150-18655211)
chr4 (194-258)||(18723758-18723819)
chr4 (16-81)||(18074029-18074094)
chr4 (223-262)||(18074229-18074268)
chr4 (166-258)||(18699073-18699161)
[»] scaffold0003 (2 HSPs)
scaffold0003 (16-81)||(59837-59902)
scaffold0003 (223-262)||(60037-60076)
[»] chr1 (2 HSPs)
chr1 (221-267)||(268020-268066)
chr1 (55-113)||(28127492-28127547)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 27592940 - 27592690
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592940 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 27592841  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592840 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 27592741  T
Q  216 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592740 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 27592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 27679213 - 27679463
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679213 atggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 27679312  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679313 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 27679412  T
Q  216 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27679413 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 27679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 27677534 - 27677286
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27677534 atggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 27677435  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  27677434 atttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaa--a 27677337  T
Q  216 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27677336 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 27677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 27706322 - 27706073
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27706322 atggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 27706223  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  27706222 atttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaa-gtttaaagggaaataccttttttatatacagttttaaaca 27706124  T
Q  216 agtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 266  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27706123 agtactattagttatttatatgtcgaaatagttagaaatgaataatacatt 27706073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 26802709 - 26802952
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    |||||||||||| || |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26802709 atggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaatcct 26802808  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaaca 215  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||    
T  26802809 atttttcccttttatattttatttcttcaacttcaatttcccaataatctcatcttaaaggttaaatgggaaatacctttcttatatacgtttttaaaca 26802908  T
Q  216 agtactattagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    ||   |||||||||||||||||| |||||||||||||||||||||||    
T  26802909 ag---tattagttatttatatgttgaaatagttagaaatgtataata 26802952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 27604621 - 27604379
Alignment:
Q  20 agaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctattt 119  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||| ||||||||||||    
T  27604621 agaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctattt 27604522  T
Q  120 ttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaaggg---aaataccttttttatatacagttttaaacaa 216  Q
    ||||||||| |||||| ||| ||||| |||||||   |||||||||||| || ||||||||| | |   ||||||||||||||| |||  ||||||||||    
T  27604521 ttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaataccttttttatttacgtttttaaacaa 27604422  T
Q  217 gtactattagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    |   ||||||||||||||||||| ||||||||||||||||||||||    
T  27604421 g---tattagttatttatatgtcaaaatagttagaaatgtataata 27604379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 27698414 - 27698297
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  27698414 atggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaatcct 27698315  T
Q  116 atttttcccttttctatt 133  Q
    || |||||||||| ||||    
T  27698314 atatttcccttttgtatt 27698297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 27718299 - 27718218
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 97  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27718299 atggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 27610922 - 27610841
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 97  Q
    |||||||||||||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  27610922 atggagaggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctgggtacc 27610841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 25538846 - 25538931
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 140  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||| | ||||||| || | |||||||||||    
T  25538846 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaatcttgtttttcctttctatattttatttc 25538931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 26861880 - 26862039
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    ||||||||||||||| |||||||||  ||||||| ||| |||||||||||||| |||||||||  |||   |||||||||||| |||| || ||||||||    
T  26861880 atggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttag---tcctgggtaccccacttaacataaatcct 26861976  T
Q  116 atttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaa 181  Q
    |   |||| |||| |||||| |||||| || ||| ||| || | |||||||||||| || ||||||    
T  26861977 a---ttcctttttatattttctttctttaatttctattctagagtaatctcatctttaaagttaaa 26862039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 27531114 - 27530983
Alignment:
Q  19 gagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatt 118  Q
    ||||||||||||  ||||||||| ||||||||||| || ||||||||||| ||| | ||| |||  | |   ||||| || |||||||||||||||||||    
T  27531114 gagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgtctggccagcattataaacat---gggtagcccactttacttaaatcctatt 27531018  T
Q  119 tttcccttttctattttatttcttcaacttcaatt 153  Q
    |||||||||| |||||| |||||| || |||||||    
T  27531017 tttcccttttatattttctttctttaatttcaatt 27530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 25580025 - 25580112
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttctt 142  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||||    
T  25580025 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttctttttcctttctatattttatttctt 25580112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 26143171 - 26143256
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 140  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||| | | ||||||| || | |||||||||||    
T  26143171 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaaacttgtttttcctttctatattttatttc 26143256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 26646773 - 26646986
Alignment:
Q  43 gctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttctt 142  Q
    ||||||| ||| ||||||||||||||||| |||||| ||||   |||||||||||| |||||||||||| | | ||||||| |||| |||||| ||| ||    
T  26646773 gctctgacccaagctgctaacttgtccggataccattatag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatt 26646869  T
Q  143 caacttcaattttacaataatctcatcttaaaggttaaaagggaaatacct-tttttatatacagttttaaacaagtactattagttatttatatgtcga 241  Q
     || ||   ||  |||| ||||||||||||||| |||||  ||||| || | |||||||  |   |||||||||||   ||| | ||||||||||||| |    
T  26646870 taattttttttccacaa-aatctcatcttaaagcttaaataggaaacacatatttttattaatgtttttaaacaag---tataaattatttatatgtcaa 26646965  T
Q  242 aatagttagaaatgtataata 262  Q
    || |||||||| |||||||||    
T  26646966 aagagttagaactgtataata 26646986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 262
Target Start/End: Original strand, 26752741 - 26752954
Alignment:
Q  43 gctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttctt 142  Q
    ||||||| ||| ||||||||||||||||| |||||| ||||   |||||||||||| |||||||||||| | | ||||||| |||| |||||| ||| ||    
T  26752741 gctctgacccaagctgctaacttgtccggataccattatag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatt 26752837  T
Q  143 caacttcaattttacaataatctcatcttaaaggttaaaagggaaatacct-tttttatatacagttttaaacaagtactattagttatttatatgtcga 241  Q
     || ||   ||  |||| ||||||||||||||| |||||  ||||| || | |||||||  |   |||||||||||   ||| | ||||||||||||| |    
T  26752838 taattttttttccacaa-aatctcatcttaaagcttaaataggaaacacatatttttattaatgtttttaaacaag---tataaattatttatatgtcaa 26752933  T
Q  242 aatagttagaaatgtataata 262  Q
    || |||||||| |||||||||    
T  26752934 aagagttagaactgtataata 26752954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 26056232 - 26056290
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 113  Q
    |||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||||    
T  26056232 gctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatc 26056290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 26076202 - 26076260
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 113  Q
    |||||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||||    
T  26076202 gctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaatc 26076260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 25482048 - 25482133
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttc 140  Q
    |||||||| ||||||||||| ||| ||||||||| || |||||| |||||||||||| | | ||||||| || | |||||||||||    
T  25482048 gctgctaatttgtccggctatcattatagtcctcatgagtaccccactttacttaaaacttgtttttcctttctatattttatttc 25482133  T

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Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 26884432 - 26884564
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatcct 115  Q
    ||||||||||||||| ||||||||   ||| |||| || | ||||||||||||||||||||||  |||   || |||||| || |||||||||||||| |    
T  26884432 atggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccattttag---tcttgggtatcccactttacttaaatcat 26884528  T
Q  116 atttttcccttttctattttatttcttcaacttcaa 151  Q
    ||||| |  |||| |||||| |||||| || |||||    
T  26884529 attttccttttttatattttctttctttaatttcaa 26884564  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 27698300 - 27698259
Alignment:
Q  221 tattagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  27698300 tattagttatttatatgtcgaaatagttagaaatttataata 27698259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 25511271 - 25511333
Alignment:
Q  80 atagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttctt 142  Q
    ||||||||| ||||||||| |||||||||||||| | ||||||  |||| |||||||||||||    
T  25511271 atagtcctcatgggtaccctactttacttaaatcttgtttttcttttttatattttatttctt 25511333  T

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Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 27427526 - 27427461
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgat 81  Q
    |||||||||||||||  ||||||||  |||||||| | ||||||||||||| || |||||||||||    
T  27427526 atggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 27427326 - 27427287
Alignment:
Q  223 ttagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  27427326 ttagttatttatatgtcaaaatagttaaaaatgtataata 27427287  T

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Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 28786668 - 28786744
Alignment:
Q  181 aagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtata 259  Q
    |||||||| ||||||| ||| |||  ||||||||||||| |  || |||||| |||||| |||||||||||||||||||    
T  28786668 aagggaaacaccttttctatttacgtttttaaacaagtatt--taattatttttatgtcaaaatagttagaaatgtata 28786744  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 28792789 - 28792865
Alignment:
Q  181 aagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtata 259  Q
    |||||||| ||||||| ||| |||  ||||||||||||| |  || |||||| |||||| |||||||||||||||||||    
T  28792789 aagggaaacaccttttctatttacgtttttaaacaagtatt--taattatttttatgtcaaaatagttagaaatgtata 28792865  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 28781433 - 28781477
Alignment:
Q  43 gctctgagccaggctgctaacttgtccggctaccatgatagtcct 87  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28781433 gctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 28786572 - 28786616
Alignment:
Q  43 gctctgagccaggctgctaacttgtccggctaccatgatagtcct 87  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28786572 gctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 28792693 - 28792737
Alignment:
Q  43 gctctgagccaggctgctaacttgtccggctaccatgatagtcct 87  Q
    ||||||| ||| ||||||||||||||||||||||||  |||||||    
T  28792693 gctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

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Target: scaffold0349 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 14276 - 14195
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 97  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14276 atggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

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Target: scaffold0349; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 3340 - 3259
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 97  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3340 atggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 18731274 - 18731177
Alignment:
Q  157 caataatctcatcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgt 256  Q
    |||||||  ||||||||||  ||||  ||||| ||||||||| | |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||||    
T  18731274 caataataccatcttaaagcctaaattggaaacacctttttttt-tacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgt 18731179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 18655211 - 18655150
Alignment:
Q  194 tttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtat 258  Q
    ||||||| |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||||||    
T  18655211 tttttatttacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgtat 18655150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 18723819 - 18723758
Alignment:
Q  194 tttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtat 258  Q
    ||||||| |||| |||||||||||||   ||||||||||||| ||| ||||||||||||||||||    
T  18723819 tttttatttacatttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgtat 18723758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 18074029 - 18074094
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgat 81  Q
    |||||||||||||||  ||||||||  |||||||| | ||||||||||||| || |||||||||||    
T  18074029 atggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 18074229 - 18074268
Alignment:
Q  223 ttagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  18074229 ttagttatttatatgtcaaaatagttaaaaatgtataata 18074268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 18699161 - 18699073
Alignment:
Q  166 catcttaaaggttaaaagggaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtat 258  Q
    ||||||||||  ||||  ||||| |||||||| || |||  |||||||||||||   ||||||||||||| ||| ||||||||||||||||||    
T  18699161 catcttaaagcctaaattggaaacacctttttaat-tacgtttttaaacaagta---ttagttatttataagtcaaaatagttagaaatgtat 18699073  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 59837 - 59902
Alignment:
Q  16 atggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgat 81  Q
    |||||||||||||||  ||||||||  |||||||| | ||||||||||||| || |||||||||||    
T  59837 atggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 60037 - 60076
Alignment:
Q  223 ttagttatttatatgtcgaaatagttagaaatgtataata 262  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  60037 ttagttatttatatgtcaaaatagttaaaaatgtataata 60076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 268066 - 268020
Alignment:
Q  221 tattagttatttatatgtcgaaatagttagaaatgtataatacattt 267  Q
    |||||||| |||||||| ||||||||||||||| |||||||| ||||    
T  268066 tattagttgtttatatgacgaaatagttagaaacgtataatatattt 268020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 28127547 - 28127492
Alignment:
Q  55 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaatc 113  Q
    |||||||||||||||||||||||| ||||   ||| |||||||| ||| ||||||||||    
T  28127547 gctgctaacttgtccggctaccattatag---tccagggtaccctactatacttaaatc 28127492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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