View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_38 (Length: 251)
Name: NF20118_high_38
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_38 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 29297851 - 29298092
Alignment:
| Q |
10 |
ataattctacagagaaattgaagcctaaaaattagagcttgatgcactgaaaaaactttaatctcctaattcaatttccatcccaccatgttgatctatg |
109 |
Q |
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| T |
29297851 |
ataattctacagagaaattcaagcctaaaaattagagcttgatgcactgaaaaaactttaatctcctaattcaatttccatcccaccatgttgatctatg |
29297950 |
T |
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| Q |
110 |
aaatcaatcatctgattaatagcttcctcagttcccaaacggtcaggtccagataaaatctataagaaaatatactaattaatacaaatccatatttaag |
209 |
Q |
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| T |
29297951 |
aaatcaatcatctgattaatagcttcctcagttcccaaacggtcaggtccagataaaatctataagaaaatatactaattaatacaaatccatatttaag |
29298050 |
T |
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| Q |
210 |
caaagtagagaaaattgctttgacttacttcttttactatgg |
251 |
Q |
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| T |
29298051 |
caaagtagagaaaattgctttgacttacttcttttactatgg |
29298092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 29316184 - 29316282
Alignment:
| Q |
84 |
tttccatcccaccatgttgatctatgaaatcaatcatctgattaatagcttcctcagttcccaaacggtcaggtccagataaaatctataagaaaatat |
182 |
Q |
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| T |
29316184 |
tttccattccatcatgttgatctatgaagtcagacatctgattaatagcttcctcacttcccaggcggttaggttcagataaaatctataagaaaatat |
29316282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 29326551 - 29326654
Alignment:
| Q |
81 |
caatttccatcccaccatgttgatctatgaaatcaatcatctgattaatagcttcctcagttcccaaacggtcaggtccagataaaatctat-aagaaaa |
179 |
Q |
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| T |
29326551 |
caatttccattccctcatgttgaactatgaagtccatcatctgattaatagcttcctcagttcccaggcggttatgtccagataaaatctataaagaaaa |
29326650 |
T |
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| Q |
180 |
tata |
183 |
Q |
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|||| |
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| T |
29326651 |
tata |
29326654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 42285864 - 42285777
Alignment:
| Q |
81 |
caatttccatcccaccatgttgatctatgaaatcaatcatctgattaatagcttcctcagttcccaaacggtcaggtccagataaaat |
168 |
Q |
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| T |
42285864 |
caatttccattccatcatgttgatctatgaagtcaatcatctgattagtagcttcctcagtccccaggcggttatgtccggataaaat |
42285777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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