View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_high_44 (Length: 220)
Name: NF20118_high_44
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_high_44 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 45302639 - 45302445
Alignment:
| Q |
1 |
atggtccctccctgtgacaaaaaagctagctgggcaaaattgtcctcaacttaatgaaactcttcttaatgaaaaaccatacacatgcttttcgtacaat |
100 |
Q |
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| T |
45302639 |
atggtccctccctgtgacaaaaaagctagctgggcaaaattgtcctcaacttaatgaaactcttcttaatgaaaaaccatacacatgcttttcgtacaat |
45302540 |
T |
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| Q |
101 |
taattgccccagctccttgttcgtttatgaagcttcatttaaaatagctcggaatttagtttgaatattagtnnnnnnntaataatcacaaatata |
196 |
Q |
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| T |
45302539 |
taattgccccagctccttgttcgtttatgaagcttca-ttaaaatagctcggaatttagtttgaatataagtaaaaaaataataatcacaaatata |
45302445 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 8080296 - 8080324
Alignment:
| Q |
192 |
atatagagtaatgatacatagacaccctt |
220 |
Q |
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| T |
8080296 |
atatagagtaatgatacatagacaccctt |
8080324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 36362021 - 36362049
Alignment:
| Q |
192 |
atatagagtaatgatacatagacaccctt |
220 |
Q |
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| T |
36362021 |
atatagagtaatgatacatagacaccctt |
36362049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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