View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20118_high_7 (Length: 509)

Name: NF20118_high_7
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20118_high_7
NF20118_high_7
[»] chr4 (8 HSPs)
chr4 (16-434)||(24512015-24512433)
chr4 (446-509)||(24511955-24512022)
chr4 (166-199)||(30842178-30842211)
chr4 (169-230)||(56241844-56241905)
chr4 (166-198)||(9889341-9889373)
chr4 (166-198)||(25312763-25312795)
chr4 (166-198)||(39636833-39636865)
chr4 (166-198)||(54150574-54150606)
[»] chr2 (10 HSPs)
chr2 (299-423)||(9536265-9536393)
chr2 (155-198)||(5916235-5916278)
chr2 (155-198)||(36312348-36312391)
chr2 (166-225)||(38600447-38600506)
chr2 (166-221)||(41580714-41580769)
chr2 (246-284)||(9536877-9536915)
chr2 (164-221)||(3853949-3854006)
chr2 (166-199)||(23358329-23358362)
chr2 (166-198)||(8170384-8170416)
chr2 (166-198)||(25747886-25747918)
[»] chr5 (3 HSPs)
chr5 (155-227)||(3060216-3060288)
chr5 (155-198)||(4292226-4292269)
chr5 (166-198)||(32030791-32030823)
[»] chr3 (5 HSPs)
chr3 (166-227)||(10853273-10853334)
chr3 (153-198)||(42475772-42475817)
chr3 (166-198)||(30811538-30811570)
chr3 (166-198)||(35425396-35425428)
chr3 (166-198)||(48189448-48189480)
[»] chr8 (4 HSPs)
chr8 (166-199)||(36114047-36114080)
chr8 (166-227)||(3097212-3097273)
chr8 (166-199)||(4941787-4941820)
chr8 (166-198)||(38114515-38114547)
[»] chr7 (5 HSPs)
chr7 (155-198)||(32187024-32187067)
chr7 (166-221)||(47021980-47022035)
chr7 (176-229)||(34537029-34537082)
chr7 (166-199)||(47217534-47217567)
chr7 (166-198)||(42740476-42740508)
[»] chr6 (2 HSPs)
chr6 (166-221)||(33899011-33899066)
chr6 (155-229)||(5584044-5584117)
[»] scaffold0381 (1 HSPs)
scaffold0381 (166-198)||(9173-9205)
[»] chr1 (2 HSPs)
chr1 (166-198)||(10470676-10470708)
chr1 (166-198)||(47123473-47123505)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 24512433 - 24512015
Alignment:
Q  16 aacaatggggtaaaattggattgcgtacaacaaaagaataattgctaatatttactggagaagaaactatgactgatgaggattatgatgaacaacaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24512433 aacaatggggtaaaattggattgcgtacaacaaaagaataattgctaatatttactggagaagaaactatgactgatgaggatgatgatgaacaacaatt 24512334  T
Q  116 cacgtctgtttggttttgcggtaggaataattcactattatagaatgaattttgagagaattgattttgattaaaagtaagtttaaaataacttaattta 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512333 cacgtctgtttggttttgcggtaggaataattcagtattatagaatgaattttgagagaattgattttgattaaaagtaagtttaaaataacttaattta 24512234  T
Q  216 tgtttgaatatattattatggtaaaattatcaaaatgggtttcaattttatttaaaatgtatataaaaagagtttctagaggacaaaagtataaataaag 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24512233 tgtttggatatattattatggtaaaattatcaaaatgggtttcaattttatttaaaatgtatataaaaagagtttttagaggacaaaagtataaataaag 24512134  T
Q  316 taccatgtatctgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgatttgaatgccatgacttgctttga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24512133 taccatgtatctgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgatttgaatgccatgacttgctttga 24512034  T
Q  416 attatacatagctaaacat 434  Q
    |||||||||||||||||||    
T  24512033 attatacatagctaaacat 24512015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 509
Target Start/End: Complemental strand, 24512022 - 24511955
Alignment:
Q  446 ctaagcatgtgaattatc----actaaagttgtgtttggcattatttaactcatatctgtgctgctcc 509  Q
    |||| |||||||||||||    |||||||||| ||||||||||||||||||||||| |||| ||||||    
T  24512022 ctaaacatgtgaattatctatcactaaagttgggtttggcattatttaactcatatttgtggtgctcc 24511955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 30842211 - 30842178
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagttt 199  Q
    |||||||||||||||||||||||||||| |||||    
T  30842211 tttgagagaattgattttgattaaaagtgagttt 30842178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 56241844 - 56241905
Alignment:
Q  169 gagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatatatta 230  Q
    ||||||||||||||||||||||||| ||||| | || | || ||||||||||| ||| ||||    
T  56241844 gagagaattgattttgattaaaagtgagtttgatatgaattgatttatgtttggatacatta 56241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 9889341 - 9889373
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  9889341 tttgagagaattgattttgattaaaagtgagtt 9889373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 25312795 - 25312763
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  25312795 tttgagagaattgattttgattaaaagtgagtt 25312763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 39636865 - 39636833
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  39636865 tttgagagaattgattttgattaaaagtgagtt 39636833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 54150606 - 54150574
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  54150606 tttgagagaattgattttgattaaaagtgagtt 54150574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 299 - 423
Target Start/End: Complemental strand, 9536393 - 9536265
Alignment:
Q  299 caaaagtataaataaagtaccatgtatc----tgaaatcttggaaatgattctcaatccacacaaatgctactcatgttagcttcactgtgaatcgattt 394  Q
    |||||||||||| ||||||| |||||||    ||||||||||||  |||||| |  || ||||||| ||||||| || ||||||||||||||||| ||||    
T  9536393 caaaagtataaacaaagtacgatgtatcacagtgaaatcttggagttgattcccgttcaacacaaaagctactcctgctagcttcactgtgaatcaattt 9536294  T
Q  395 gaatgccatgacttgctttgaattataca 423  Q
     |||||||||| || | |||||| |||||    
T  9536293 taatgccatgaattacattgaatcataca 9536265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 5916235 - 5916278
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||    
T  5916235 atagaattaattttgagagaattgattttggttaaaagtgagtt 5916278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 36312391 - 36312348
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||    
T  36312391 atagaattaattttgagagaattgattttggttaaaagtgagtt 36312348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 38600447 - 38600506
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaata 225  Q
    ||||||||||||||||||| |||||||| ||||| |  ||| || |||||||||||||||    
T  38600447 tttgagagaattgattttggttaaaagtgagtttgatgtaaattgatttatgtttgaata 38600506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 41580714 - 41580769
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttg 221  Q
    ||||||||||||||||||| |||||||| ||||| |  ||| ||||||||||||||    
T  41580714 tttgagagaattgattttggttaaaagtgagtttgatgtaaattaatttatgtttg 41580769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 9536915 - 9536877
Alignment:
Q  246 caaaatgggtttcaattttatttaaaatgtatataaaaa 284  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  9536915 caaaatgggttttaattttatttaaaatgtatattaaaa 9536877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 3854006 - 3853949
Alignment:
Q  164 attttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttg 221  Q
    ||||||| |||||||||||||||||||||| |||| ||  ||| || |||||||||||    
T  3854006 attttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgtttg 3853949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 23358362 - 23358329
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagttt 199  Q
    |||||||||||||||||||||||||||| |||||    
T  23358362 tttgagagaattgattttgattaaaagtgagttt 23358329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 8170416 - 8170384
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  8170416 tttgagagaattgattttgattaaaagtgagtt 8170384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 25747886 - 25747918
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  25747886 tttgagagaattgattttgattaaaagtgagtt 25747918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 3060216 - 3060288
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatata 227  Q
    ||||||| || |||||||||||||||||||||||||||| ||||| | || | |||||||||||||| |||||    
T  3060216 atagaattaagtttgagagaattgattttgattaaaagtgagttttatatgaattaatttatgtttggatata 3060288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 4292269 - 4292226
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||| || |||||||||||||||||||||||||| ||||||    
T  4292269 atagaattaagtttgagagaattgattttgattaaaaataagtt 4292226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 32030823 - 32030791
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||||||||||||||| |||||||||||||    
T  32030823 tttgagagaattgattttggttaaaagtaagtt 32030791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 10853273 - 10853334
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatata 227  Q
    ||||||||||||||||||| |||||||| ||||||| |||| || ||||||||||| |||||    
T  10853273 tttgagagaattgattttggttaaaagtgagtttaatataaattgatttatgtttggatata 10853334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 42475817 - 42475772
Alignment:
Q  153 ttatagaatgaattttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||  | |||||||||||||||||||||||||||| ||||    
T  42475817 ttatagaattgagtttgagagaattgattttgattaaaagtgagtt 42475772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 30811538 - 30811570
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  30811538 tttgagagaattgattttgattaaaagtgagtt 30811570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 35425428 - 35425396
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  35425428 tttgagagaattgattttgattaaaagtgagtt 35425396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 48189448 - 48189480
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  48189448 tttgagagaattgattttgattaaaagtgagtt 48189480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 36114047 - 36114080
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagttt 199  Q
    ||||||||||||||||||||||||||||||||||    
T  36114047 tttgagagaattgattttgattaaaagtaagttt 36114080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 3097212 - 3097273
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatata 227  Q
    ||||||||||||||||||| |||||||| ||||| | || | || ||||||||||| |||||    
T  3097212 tttgagagaattgattttggttaaaagtgagtttgatatgaattgatttatgtttggatata 3097273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 4941787 - 4941820
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagttt 199  Q
    |||||||||||||||||||||||||||| |||||    
T  4941787 tttgagagaattgattttgattaaaagtgagttt 4941820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 38114547 - 38114515
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||||||||||||||| |||||||||||||    
T  38114547 tttgagagaattgattttggttaaaagtaagtt 38114515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 32187067 - 32187024
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||    
T  32187067 atagaattaattttaagagaattgattttgattaaaagtgagtt 32187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 47022035 - 47021980
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttg 221  Q
    ||||||||||||||||||| ||||||||||||| ||| | | || |||||||||||    
T  47022035 tttgagagaattgattttggttaaaagtaagttgaaagtgaattgatttatgtttg 47021980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 34537029 - 34537082
Alignment:
Q  176 ttgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatatatt 229  Q
    |||||||| |||||||||||||| || |||| || ||||||||||| |||||||    
T  34537029 ttgatttttattaaaagtaagttgaagataaatttatttatgtttgtatatatt 34537082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 47217534 - 47217567
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagttt 199  Q
    |||||||||||||||||||||||||||| |||||    
T  47217534 tttgagagaattgattttgattaaaagtgagttt 47217567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 42740508 - 42740476
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    ||||||||||||||||||| |||||||||||||    
T  42740508 tttgagagaattgattttggttaaaagtaagtt 42740476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 33899011 - 33899066
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttg 221  Q
    |||||||||||||||||||||||||||| ||||| | || | || |||||||||||    
T  33899011 tttgagagaattgattttgattaaaagtgagtttgatatgaattgatttatgtttg 33899066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 5584044 - 5584117
Alignment:
Q  155 atagaatgaattttgagagaattgattttgattaaaagtaagtttaaaataacttaatttatgtttgaatatatt 229  Q
    |||||||  ||||||| |||||||||||||| ||||||| |||||||  ||| || ||||||||||| |||||||    
T  5584044 atagaattgattttgacagaattgattttgactaaaagtgagtttaatgtaa-ttgatttatgtttggatatatt 5584117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 9205 - 9173
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  9205 tttgagagaattgattttgattaaaagtgagtt 9173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 10470708 - 10470676
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  10470708 tttgagagaattgattttgattaaaagtgagtt 10470676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 47123505 - 47123473
Alignment:
Q  166 tttgagagaattgattttgattaaaagtaagtt 198  Q
    |||||||||||||||||||||||||||| ||||    
T  47123505 tttgagagaattgattttgattaaaagtgagtt 47123473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University