View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_10 (Length: 454)
Name: NF20118_low_10
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 186 - 348
Target Start/End: Complemental strand, 36443595 - 36443434
Alignment:
| Q |
186 |
ataaaaatgtaaccctgcaagtactatgcaattatcaatcataatacaaggatggtaattaaaaaatgtttctagcatgagaaagtattttttagcactt |
285 |
Q |
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| T |
36443595 |
ataaaaatgtaacca-gcaagcactatgcaattatcaatcataatacagggatggtaattaaaaaatgtttctagcatgagaaagtattttttagcactt |
36443497 |
T |
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| Q |
286 |
ttgttgtgattgtggttggccttaaacaattttcaactatgttcttttgttctcttttcaaaa |
348 |
Q |
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| T |
36443496 |
ttgttgtgattgtggttggccttcaacaattttcaactatgttcttttgttctcttttaaaaa |
36443434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 36443775 - 36443660
Alignment:
| Q |
7 |
ggagcagttaatacgggtaaaatgtgggaattaatttgtcactacttcaatatttctctacatatacttatttttctgtgtaaaatatttgtattc-aaa |
105 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36443775 |
ggagcagttagtacgggtaaaatgtgggaattaatttgtcactacttcaatatttctttacatatacttatttttctgtgtaaaatatttgtattctaaa |
36443676 |
T |
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| Q |
106 |
ttttatatgacgagcg |
121 |
Q |
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|||| ||||||||||| |
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| T |
36443675 |
ttttctatgacgagcg |
36443660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 36443256 - 36443159
Alignment:
| Q |
339 |
cttttcaaaatcttggaaattaccccatccatcaactgctcacatgcccctcaaactggtcatatttaaaacaataaaaaattgcgaatgtcggaaat |
436 |
Q |
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| T |
36443256 |
cttttcaaaatcttggaaattgccccatccatcaactgctcacatgcccatcaaactggtcatatttaaaacaataaaaaattgcgaatgtcggaaat |
36443159 |
T |
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