View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20118_low_11 (Length: 443)
Name: NF20118_low_11
Description: NF20118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20118_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 230 - 427
Target Start/End: Original strand, 6476084 - 6476281
Alignment:
| Q |
230 |
tgcataatgatcgaatttgataaacaaacacagatataaactagtaataacaaattggaatccaacagaagtacctgctattcggatcgtaatagaaacc |
329 |
Q |
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| T |
6476084 |
tgcataatgatcgaatttgataaacaaacacagatataaactagtaataacaaattggaatccaacagaagtacctgctattcggatcgtaatagaaacc |
6476183 |
T |
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| Q |
330 |
actgatagaaccatcggtgcatgagaaacaaacgtagtaaaatccagctattgttaacccacagtcagttccgacattcacgaaatactgctccttcc |
427 |
Q |
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| T |
6476184 |
actgatagaaccatcggtgcatgagaaacaaacgtagtaaaatccagctattgttaacccacagtcagttccgacattcacgaaatactgctccttcc |
6476281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 6475882 - 6476050
Alignment:
| Q |
1 |
gtcaaaaactttcttaagatctataaaagagaatgaatgataacgaaataaagcgactcctccaaagtgaagaatgtaaatctaacgcagtttgttatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6475882 |
gtcaaaaactttcttaagatctataaaagagaatgaatgataaagaaataaagtgactcctccaaagtgaagaatgtaaatctaacgcggtttgttatat |
6475981 |
T |
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| Q |
101 |
acatccatgcatgttatcagaatccaagtcattgatttttcaataaactagttataaatctggaaatgt |
169 |
Q |
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| T |
6475982 |
acatccatgcatgttatcataatcaaagtcattgatttttcaataaactggttataaatctggaaatgt |
6476050 |
T |
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